PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g022670.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 238aa    MW: 27322.6 Da    PI: 8.854
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g022670.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.62.7e-12107148351
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                        +GV++  k+ +W A I++      +k+++lg+ gt eeAa+++++a+ 
  Sopen09g022670.1 107 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAARLYDRAAF 148
                       79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.54489161IPR001471AP2/ERF domain
PfamPF008472.2E-6106149IPR001471AP2/ERF domain
SMARTSM003807.6E-5106163IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-8107151IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.2E-7109153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MVSIRRRKLL GLCSGRSTFL VPLPKFSENG HFAEHRFFSN RPTSVHPMPS TDIDESKEKI  60
AVKVIPGSSN SHASGSLMEQ TAQQFPEVKR RKRHRRKHFE NQEPCLMRGV YFKNMKWQAA  120
IKVDKKQIHL GTVGTQEEAA RLYDRAAFMC GREPNFELSE EEKQELRQFK WDDFLAFTRS  180
AITNKKTRRR SGAGARRKSE PSTSALNSEE DEEEEEGGEP ESNSFSASED IEHDILFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2540662e-96AC254066.8 Solanum lycopersicum strain Heinz 1706 chromosome 9 clone sle-10p22 map 9, complete sequence.
GenBankHG9754482e-96HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755212e-96HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015088551.11e-177ethylene-responsive transcription factor-like protein At4g13040 isoform X3
TrEMBLA0A3Q7I2K01e-173A0A3Q7I2K0_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000450911e-141(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.12e-46ERF family protein