PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g022670.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 252aa    MW: 29087.8 Da    PI: 9.1433
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g022670.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.64.9e-11107145348
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 
                        +GV++  k+ +W A I++      +k+++lg+ gt eeAa+++++
  Sopen09g022670.2 107 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAARLYDR 145
                       79**98..47*********4.....5******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.4E-5106145IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-7107147IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-4109145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MVSIRRRKLL GLCSGRSTFL VPLPKFSENG HFAEHRFFSN RPTSVHPMPS TDIDESKEKI  60
AVKVIPGSSN SHASGSLMEQ TAQQFPEVKR RKRHRRKHFE NQEPCLMRGV YFKNMKWQAA  120
IKVDKKQIHL GTVGTQEEAA RLYDRLVPYW YLIRWGFLGA AFMCGREPNF ELSEEEKQEL  180
RQFKWDDFLA FTRSAITNKK TRRRSGAGAR RKSEPSTSAL NSEEDEEEEE GGEPESNSFS  240
ASEDIEHDIL FS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2540662e-96AC254066.8 Solanum lycopersicum strain Heinz 1706 chromosome 9 clone sle-10p22 map 9, complete sequence.
GenBankHG9754482e-96HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755212e-96HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027767565.11e-148ethylene-responsive transcription factor-like protein At4g13040 isoform X2
TrEMBLA0A3Q7I2K01e-138A0A3Q7I2K0_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000450911e-136(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62462433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.14e-42ERF family protein