PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g025050.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 160aa    MW: 18568.4 Da    PI: 9.3871
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g025050.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.23.3e-11246145
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                      k ien++ r v+fskR+ +++  A+   +  +a+v v++fs++gk
  Sopen09g025050.1  2 KLIENERARMVSFSKRKRTLFEDAHKFATRAGADVGVMLFSPSGK 46
                      569*****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554559.42E-16182IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.605154IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-6153IPR002100Transcription factor, MADS-box
PfamPF003197.1E-16449IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MKLIENERAR MVSFSKRKRT LFEDAHKFAT RAGADVGVML FSPSGKPYSN DSATIADIID  60
RFLKMKQEDH KRDYAEGESN GFEALKDLHK ELQAWNDKEK KRILMHKIMH PGSEIPSDKH  120
MEEQKLALKL KVEKFKNEIQ SAIMTEHLKF DLNVVPDPKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015087603.11e-115agamous-like MADS-box protein AGL29
TrEMBLA0A3Q7I4P31e-107A0A3Q7I4P3_SOLLC; Uncharacterized protein
STRINGSolyc09g061950.1.11e-108(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17801260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.16e-13AGAMOUS-like 29