PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g027410.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 341aa    MW: 39544.4 Da    PI: 5.363
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g027410.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.28.2e-36121032102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+ye+++d+++++++sw++ g+sfvv+d++ f++++Lpk+Fkh+nf+SFvRQLn+YgF+k++ e+         weF+++ F kg+k+ll
  Sopen09g027410.1  12 FLTKTYEMVDDSTTDHIVSWNRGGQSFVVWDPHFFSTTLLPKFFKHNNFSSFVRQLNTYGFRKIDPER---------WEFANEAFLKGSKHLL 95 
                       9****************************************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++ikr+k+
  Sopen09g027410.1  96 RNIKRRKT 103
                       ******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.36E-358101IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-388101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-588101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-201235IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-3112101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-205062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEGLHDIGPP PFLTKTYEMV DDSTTDHIVS WNRGGQSFVV WDPHFFSTTL LPKFFKHNNF  60
SSFVRQLNTY GFRKIDPERW EFANEAFLKG SKHLLRNIKR RKTPNSSQPL PSTEQGLGPC  120
VELGRFGFDG EVDRLRRDKQ VLMMELVKLR QNQQNTRAYL RSLEVRLQGT ERKQQQMMNF  180
LARAMQNPEF VQQLIQQKGK RREIEEDITK KRRRPIDHQG PSATLHVGGS SHSIKSEPLE  240
FGEANEFQVS ELEALALEMQ GYGRARKDQQ EEYTIEGLEQ FGNTDKELDV GFWEELFNDE  300
DVSGNEDGEE EDVDVLAESE FSSIQRRMKK AAIWIDQLLV G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-241010327131Heat shock factor protein 1
5d5v_B3e-241010327131Heat shock factor protein 1
5d5v_D3e-241010327131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199213KRREIEEDITKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015087390.10.0heat stress transcription factor A-6b isoform X3
RefseqXP_027775381.10.0heat stress transcription factor A-6b isoform X1
RefseqXP_027775386.10.0heat stress transcription factor A-6b isoform X3
SwissprotQ9LUH81e-117HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLM1BPC10.0M1BPC1_SOLTU; Uncharacterized protein
STRINGSolyc09g065660.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-116heat shock transcription factor A6B