PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g027970.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 244aa    MW: 27437.1 Da    PI: 5.9127
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g027970.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601247.5e-3971071100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+lrrkC k+Cv+apyf+ eq + +f ++hk+FGasnv+kll+++p ++r +a+ +++yeA+ar++dP+yG+v++i++lqqq+ +l+a
  Sopen09g027970.1   7 PCGACKFLRRKCIKGCVFAPYFCYEQgATHFSAIHKVFGASNVSKLLAHIPVSDRGEAAVTIAYEAQARLQDPIYGCVSHIFALQQQVFNLQA 99 
                       7*************************89***************************************************************** PP

            DUF260  93 elallkee 100
                       +la+lke+
  Sopen09g027970.1 100 QLASLKEQ 107
                       ***99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.3476108IPR004883Lateral organ boundaries, LOB
PfamPF031954.3E-377105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MTGTGSPCGA CKFLRRKCIK GCVFAPYFCY EQGATHFSAI HKVFGASNVS KLLAHIPVSD  60
RGEAAVTIAY EAQARLQDPI YGCVSHIFAL QQQVFNLQAQ LASLKEQAAA QNIQNGSNYI  120
TNPNYDKFQD VQSWFHHQSE NQNTMPQFDH SSLTSNNNIG SSIPYYDENN YNNNMTSNDH  180
SYHMGNNYEN INFVVPIKEN LSSFEEGGSC SVDSSFDNNK QWTFQDHDVV DDLQSVAFRY  240
LQHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-3631017104LOB family transfactor Ramosa2.1
5ly0_B7e-3631017104LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:15659631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015087587.10.0LOB domain-containing protein 29-like
SwissprotQ9SLB63e-65LBD17_ARATH; LOB domain-containing protein 17
TrEMBLA0A3Q7J0G30.0A0A3Q7J0G3_SOLLC; Uncharacterized protein
STRINGSolyc09g066270.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84462230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.11e-67LBD family protein
Publications ? help Back to Top
  1. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]