PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g029390.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family CO-like
Protein Properties Length: 373aa    MW: 42096.7 Da    PI: 6.0224
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g029390.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.78.9e-071355339
          zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                      +++C+ ++++ + l+C+ ++  lC +C  e H+       Ht+
  Sopen09g029390.1 13 QHVCDFCGNNTALLYCRADSAKLCFTCDREVHSTnqlftkHTR 55
                      689*****************************66778888875 PP
2zf-B_box21.45.4e-075899542
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42
                       C+++++ ++++ C +  + lC++C  e+H+     H+++pl
  Sopen09g029390.1 58 LCNHCDSSPASILCCTETSVLCQNCDWESHNKllslHERRPL 99
                      6*****************************879999999886 PP
3CCT621.9e-21322363142
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvk 42 
                       Re a++RYkeK+ktR++eK+irYesRKa+Ae+R R+KGrF+k
  Sopen09g029390.1 322 RETAVSRYKEKKKTRRYEKHIRYESRKARAETRTRIKGRFAK 363
                       99***************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.9971158IPR000315B-box-type zinc finger
SMARTSM003361.9E-121158IPR000315B-box-type zinc finger
PfamPF006431.1E-51355IPR000315B-box-type zinc finger
CDDcd000214.42E-61555No hitNo description
PROSITE profilePS501199.8695499IPR000315B-box-type zinc finger
CDDcd000212.79E-45899No hitNo description
SMARTSM003360.185999IPR000315B-box-type zinc finger
PROSITE profilePS5101714.862322364IPR010402CCT domain
PfamPF062033.5E-16322364IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MTEVKKDEEN HHQHVCDFCG NNTALLYCRA DSAKLCFTCD REVHSTNQLF TKHTRWLLCN  60
HCDSSPASIL CCTETSVLCQ NCDWESHNKL LSLHERRPLE GFTGCPSVSE LLSILGFEDL  120
GKKELLCGGD DGGYGFSDWV IWDTPSVVTL DDLIANNNDS GHNYQAIGVP PLPKNRNAAC  180
GKHKEEILSQ LRELSKLEPN SGDDQDENVP TTGFQSMEPV QNCPLRYKGS GFMQSSDQHV  240
VPSSEGSAFH WHGDTGEFVD QGFSSSLTDC FIETKCLLPD RDSDVCDASG GGNEEQSHHP  300
PTTETFQMVP KVVHRELNSQ ERETAVSRYK EKKKTRRYEK HIRYESRKAR AETRTRIKGR  360
FAKMDYRDSS VHQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0136850.0BT013685.1 Lycopersicon esculentum clone 132507F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085980.10.0zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A3Q7I5790.0A0A3Q7I579_SOLLC; Uncharacterized protein
STRINGSolyc09g074560.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73622228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-84B-box type zinc finger protein with CCT domain