PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g029520.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 432aa    MW: 46654.3 Da    PI: 8.7944
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g029520.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.92.6e-114671126
                      --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                      ++ + C++++r+G C yG++C+F+H+
  Sopen09g029520.2 46 PGVPDCSYYLRNGSCGYGPNCRFNHP 71
                      5789*********************8 PP
2zf-CCCH40.93.5e-1394119227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++C++f+rtGtCk+G +CkF+H++
  Sopen09g029520.2  94 GEPICQYFLRTGTCKFGVSCKFHHPR 119
                       579*********************96 PP
3zf-CCCH34.43.8e-11143165527
                       --SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                       +C ++++tG+Ck+G +CkF+H++
  Sopen09g029520.2 143 ECTYYLKTGHCKFGITCKFHHPQ 165
                       7********************97 PP
4zf-CCCH37.83.2e-12296321227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++C+++ +tG Ck+G++CkF+H+p
  Sopen09g029520.2 296 GQSICQYYVKTGDCKFGSSCKFHHPP 321
                       7899********************97 PP
5zf-CCCH32.81.2e-10342367227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       +  +C+f++  G+Ck+G+ CkF H++
  Sopen09g029520.2 342 GVQPCSFYLLKGFCKFGSACKFDHPM 367
                       6789********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.844573IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-64572IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-94771IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-64974IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-55171IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-692119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.63892120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-694120IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-1194119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-697119IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014138165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22138166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6141166IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-8143165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-4144164IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-6294321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.854294322IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9296321IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6297322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-6298320IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-7340367IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.394340368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5342369IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-8342367IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4344365IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MELYGPSTGS NGSQSDHQSE WVSVEQETGS MQKLGLFGRE VYPERPGVPD CSYYLRNGSC  60
GYGPNCRFNH PSDRDRRSGG KMQLGGVEFP ERMGEPICQY FLRTGTCKFG VSCKFHHPRN  120
FGGSLSNIPL NTYGYPLRMG EIECTYYLKT GHCKFGITCK FHHPQPAGMS VPAPARPFYP  180
TVQSLPAPPE ECNSALTGLR VARPPILPGS YVPSAYGPVL LHPGVVTIQN WSPYSGPVSP  240
ALSPGVHPSA GLTSVYGMSQ LASSPHAFAG PYSPLPPAAS PSSKTQKGKS FPERPGQSIC  300
QYYVKTGDCK FGSSCKFHHP PDWIASKTNC AISPIGLPLR PGVQPCSFYL LKGFCKFGSA  360
CKFDHPMGTV QYSSSASSLP DLQVAPYMLR SSFTLAPMLL PELQAGFVTG SKVDVSLSRA  420
PSSMKVQLVQ LT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-178HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027767727.10.0LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 32
SwissprotQ84W911e-160C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A3Q7J1850.0A0A3Q7J185_SOLLC; Uncharacterized protein
STRINGSolyc09g074640.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-159C3H family protein