PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen09g029590.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HB-other

Protein Properties

Length: 1224aa MW: 135454 Da PI: 7.0282

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen09g029590.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	18.1	4.7e-06	65	121	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + +s++e e+++ g+t +qV+ +F +R++ +k Sopen09g029590.1 65 KRPRDLLNPKAIKYMQSVFSVKDAISKKEAHEISALFGVTVTQVRDFFTAQRTRVRK 121 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.232	62	122	IPR001356	Homeobox domain
SMART	SM00389	0.0022	64	126	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.6E-5	65	128	IPR009057	Homeodomain-like
CDD	cd00086	6.70E-4	65	121	No hit	No description
SuperFamily	SSF46689	1.88E-6	65	129	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1224 aa Download sequence Send to blast
MENQLQLALT SPTTPLSSLL DSQKELLNSQ IHQLQNIVVQ QCNLTGINPL SQEMAAGALS 60 IKIGKRPRDL LNPKAIKYMQ SVFSVKDAIS KKEAHEISAL FGVTVTQVRD FFTAQRTRVR 120 KFMRLSMEKP IITNISIEGT CPIPLSSDPS SQTDPVPLDS AVPTCTEEGP SYLTQDEILT 180 AIDERDRHFV DNILTLMCKE ETFSRRVELM DWILEVQNPS VLYWFLTKGG VVILSAWLSE 240 AAGEEQTSVL HLILKVLCHL PLHKAFPGHM SAILQNVNSL RFYRTPDISD RARVLLERWS 300 NIFAKSQAMT KHNGVKSASD MHDEMLLQES ISEVVGDEVW NSKIEDVEEA HANLCGTSEN 360 SRSLDYPQPV KLLMASSDDS NKMLKGASVT KSRERRKVQL MEQPSQRTMA RSLGRPAAPA 420 TQGRPLSADD IQKAKMREQF LKSKYGKTNN DDSSWVKPQA PNKITSSPNG ILLGAPKLQD 480 RPKVEECAKL NSVASQGSSQ LENHLKLSLD VEEPPWKRCK KMQIPWQKPP GLQLRYASRV 540 CAGGESKEVD VQNKRVRRET EAIYRTVQEI PLNPKEPWDP EMEPDDTLTT EVPLEQLPDE 600 ERAETGVLPQ EDRETETAAL ASTSNCIATT AKPDLELLAT LSNGIATTAK PDLELLNILL 660 KHPGVVYALT SGQGGNLPSE QIVKLLDSIK ANERNSLSIQ TNLARGAEKK VEVSLPSLTP 720 SSDPGTSGLS MQNSVKNPFS QRSSMVVPEG NDVPQHAALV HSQETHQVSS LLHQQTPPVQ 780 QLAQQLALLQ AAAASYGVSQ HAVLVHSQEI HQASSLVHQQ TPLVPQLAQQ SALLQEAAGS 840 YGVPQHAPLV HSQEIHQASG FVHQQMPLAP QLSQHSAPLQ EAAGSYGVPQ RAPMDHSQEI 900 HQASSLVHQQ TPLVPQLTLP QAAAGSYGVH QHGPLVHSQE IHQASSFVHR QMPLAPQLAQ 960 QSALLQEAAG SYGNDHRPSL LNPSINQTVL ANPMHSQSSA EPAVNRNNYF FSGSTEYNQQ 1020 SATAAARIQG VTYGNIRSSQ MPIANVQQRT ITLHAPQMPL ERPQLQTQRQ PGYAPEHIWG 1080 TIPGSALSRG HQENAIPNLY NPHVAEHVEP GLQQAAWRGN NNYAEGAGFE SWRPDNRPVR 1140 RQEQVARWNY AEPQMNMRDR YRPDWSASHN PGHYLGYHCR ADGVNERQGD GPHWSTSRNP 1200 EHYSGYRGRA DGVNERRGDR RRRS

Sequence ? help Back to Top

Protein Sequence Length: 1224 aa Download sequence Send to blast

MENQLQLALT SPTTPLSSLL DSQKELLNSQ IHQLQNIVVQ QCNLTGINPL SQEMAAGALS  60
IKIGKRPRDL LNPKAIKYMQ SVFSVKDAIS KKEAHEISAL FGVTVTQVRD FFTAQRTRVR  120
KFMRLSMEKP IITNISIEGT CPIPLSSDPS SQTDPVPLDS AVPTCTEEGP SYLTQDEILT  180
AIDERDRHFV DNILTLMCKE ETFSRRVELM DWILEVQNPS VLYWFLTKGG VVILSAWLSE  240
AAGEEQTSVL HLILKVLCHL PLHKAFPGHM SAILQNVNSL RFYRTPDISD RARVLLERWS  300
NIFAKSQAMT KHNGVKSASD MHDEMLLQES ISEVVGDEVW NSKIEDVEEA HANLCGTSEN  360
SRSLDYPQPV KLLMASSDDS NKMLKGASVT KSRERRKVQL MEQPSQRTMA RSLGRPAAPA  420
TQGRPLSADD IQKAKMREQF LKSKYGKTNN DDSSWVKPQA PNKITSSPNG ILLGAPKLQD  480
RPKVEECAKL NSVASQGSSQ LENHLKLSLD VEEPPWKRCK KMQIPWQKPP GLQLRYASRV  540
CAGGESKEVD VQNKRVRRET EAIYRTVQEI PLNPKEPWDP EMEPDDTLTT EVPLEQLPDE  600
ERAETGVLPQ EDRETETAAL ASTSNCIATT AKPDLELLAT LSNGIATTAK PDLELLNILL  660
KHPGVVYALT SGQGGNLPSE QIVKLLDSIK ANERNSLSIQ TNLARGAEKK VEVSLPSLTP  720
SSDPGTSGLS MQNSVKNPFS QRSSMVVPEG NDVPQHAALV HSQETHQVSS LLHQQTPPVQ  780
QLAQQLALLQ AAAASYGVSQ HAVLVHSQEI HQASSLVHQQ TPLVPQLAQQ SALLQEAAGS  840
YGVPQHAPLV HSQEIHQASG FVHQQMPLAP QLSQHSAPLQ EAAGSYGVPQ RAPMDHSQEI  900
HQASSLVHQQ TPLVPQLTLP QAAAGSYGVH QHGPLVHSQE IHQASSFVHR QMPLAPQLAQ  960
QSALLQEAAG SYGNDHRPSL LNPSINQTVL ANPMHSQSSA EPAVNRNNYF FSGSTEYNQQ  1020
SATAAARIQG VTYGNIRSSQ MPIANVQQRT ITLHAPQMPL ERPQLQTQRQ PGYAPEHIWG  1080
TIPGSALSRG HQENAIPNLY NPHVAEHVEP GLQQAAWRGN NNYAEGAGFE SWRPDNRPVR  1140
RQEQVARWNY AEPQMNMRDR YRPDWSASHN PGHYLGYHCR ADGVNERQGD GPHWSTSRNP  1200
EHYSGYRGRA DGVNERRGDR RRRS

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	0.0	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015087912.1	0.0	homeobox protein LUMINIDEPENDENS-like isoform X2
Swissprot	Q38796	1e-143	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A0V0IY70	0.0	A0A0V0IY70_SOLCH; Putative homeobox protein LUMINIDEPENDENS-like
STRING	XP_009604664.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5240	21	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-141	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]