PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g032280.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 233aa    MW: 27084.8 Da    PI: 9.2041
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g032280.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.12.4e-0682128455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h + Er RR++ ++++ +L +llP       +K++K +i++ A++ I +Lq
  Sopen09g032280.1  82 KHMIKERIRREKQKQSYLNLYKLLPMG-----TKNEKNAIVQTATRRIEELQ 128
                       68999********************97.....8*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.46E-1069141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.43E-576129No hitNo description
PROSITE profilePS5088810.36678127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-582142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEEFFQVSWF CDDENETNNN FVVNQSAFVS FGSKSNEGFG VCSYGNVSMN HRNMNKRMIE  60
FLKKNWSPKN GQVKIEKEKV HKHMIKERIR REKQKQSYLN LYKLLPMGTK NEKNAIVQTA  120
TRRIEELQKH KENLEKRNDE IQLILAQSDK KEEEFEKAKI KAKVGNPICG VDSMLEVLKC  180
LRNCGTKANS IQSSFSHQEF STLIEIETKS GAAEIEKAVQ NTLFEVERNF RAH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015087500.11e-171transcription factor bHLH92 isoform X2
TrEMBLA0A3Q7I6U61e-166A0A3Q7I6U6_SOLLC; Uncharacterized protein
STRINGSolyc09g083360.2.11e-167(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA124631821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.16e-41bHLH family protein