PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g034850.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 261aa    MW: 29376.1 Da    PI: 9.6882
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g034850.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.3e-1990138355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ++GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+g
  Sopen09g034850.1  90 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAFAYDTAAYMLRG 138
                       8******9.**********955...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.17E-3188148No hitNo description
PROSITE profilePS5103222.41889146IPR001471AP2/ERF domain
SMARTSM003803.3E-3689152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-3189147IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2289147IPR016177DNA-binding domain
PRINTSPR003676.7E-1190101IPR001471AP2/ERF domain
PfamPF008471.2E-1290138IPR001471AP2/ERF domain
PRINTSPR003676.7E-11112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MSSSIGHESQ IHYQEVATTN PTNWLKMNQT ITNCTTTKGF SDYWLSTTKT QPMKFKGSSR  60
KSSLVHYEKS SSSSSSSSSS SMIASQGKLF RGVRQRHWGK WVAEIRLPRN RTRVWLGTFD  120
TAEEAAFAYD TAAYMLRGDY AHLNFPHLKN QLKANSINGN ITSLLEAKIR AISTQSKKKA  180
NNISDRDEII ISPKGVSDDD ATIKNTIVQN QEKEINCEKL MEITKVKNIN NQENVDGVQL  240
SRMPSLDMDM IWDALLVSDL S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2285156168ATERF1
3gcc_A6e-2285156168ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015087507.10.0ethylene-responsive transcription factor ERF062
SwissprotQ9SVQ04e-63ERF62_ARATH; Ethylene-responsive transcription factor ERF062
TrEMBLK4CWM11e-180K4CWM1_SOLLC; Uncharacterized protein
STRINGSolyc09g091950.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA109211825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.11e-51ERF family protein