PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g036050.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 370aa    MW: 39603.8 Da    PI: 8.3856
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g036050.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.74.9e-09286348655
                       HHHHHHHHHHHHHHHHHHHCTSCC.C...............TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPk.as............kapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR ri  ++ +L++l+P+ +                s+  s a++L +Av++I+ Lq
  Sopen09g036050.1 286 SIAERERRTRISGKLKKLQDLVPNmDKqtsytpilttisCLFSQQTSYADMLDLAVQHIRTLQ 348
                       689*********************888************899999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.51280347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-12283363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-9284352No hitNo description
Gene3DG3DSA:4.10.280.106.0E-12285362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9286353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-6286348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MYPSSTSSSS QGSMSHTSTT AGGAGGGLTR YGSAPGSFLT TAVEAVVNGN HEFASHGSHH  60
SHLGPSRFFQ SNLASTSLNS ESTSKAKEQS NLQRSIGFND LTIGGGGGVL PTTSTTPLVR  120
HSSSPARFLN QLATAAGDTV SMGRGSYNPK GGGDSGRGIT RLNSQLSFTR QEALSQIAEE  180
NEDIEGTSIA NGHRKSTHSY ASASSFAMGS WEDNNSIMFS VTPSKRSKQI SNDIVNGLDD  240
GETQFQFGLS QTALEIASMD RLLHIPEDSV PCKIRAKRGC ATHPRSIAER ERRTRISGKL  300
KKLQDLVPNM DKQTSYTPIL TTISCLFSQQ TSYADMLDLA VQHIRTLQDQ VQNLNTELEN  360
CKCGCRKSSQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015087287.10.0transcription factor bHLH128-like isoform X2
TrEMBLA0A3Q7IA680.0A0A3Q7IA68_SOLLC; Uncharacterized protein
STRINGSolyc09g098110.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.13e-72bHLH family protein