PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g036050.3
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 353aa    MW: 37718.6 Da    PI: 8.4958
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g036050.3genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.7e-11286331655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++I+ Lq
  Sopen09g036050.3 286 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIRTLQ 331
                       689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.954280330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-15283346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.57E-11284335No hitNo description
Gene3DG3DSA:4.10.280.105.4E-14285345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12286336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-8286331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MYPSSTSSSS QGSMSHTSTT AGGAGGGLTR YGSAPGSFLT TAVEAVVNGN HEFASHGSHH  60
SHLGPSRFFQ SNLASTSLNS ESTSKAKEQS NLQRSIGFND LTIGGGGGVL PTTSTTPLVR  120
HSSSPARFLN QLATAAGDTV SMGRGSYNPK GGGDSGRGIT RLNSQLSFTR QEALSQIAEE  180
NEDIEGTSIA NGHRKSTHSY ASASSFAMGS WEDNNSIMFS VTPSKRSKQI SNDIVNGLDD  240
GETQFQFGLS QTALEIASMD RLLHIPEDSV PCKIRAKRGC ATHPRSIAER ERRTRISGKL  300
KKLQDLVPNM DKQTSYADML DLAVQHIRTL QDQVQNLNTE LENCKCGCRK SSQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015087287.10.0transcription factor bHLH128-like isoform X2
SwissprotQ8H1027e-82BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A3Q7IA680.0A0A3Q7IA68_SOLLC; Uncharacterized protein
STRINGSolyc09g098110.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-76bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]