PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g003030.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HB-other
Protein Properties Length: 602aa    MW: 65457.9 Da    PI: 4.5095
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g003030.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox171e-051474755
                      --HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
          Homeobox  7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                      f++ ++ e+e+  +      p +e   +LA+k            ++ +qV +WFqNrR+  
  Sopen10g003030.1 14 FNPAEVAEMEAILQAhnITMPAREVLVDLAEKFssssersgkfVVQMKQVWNWFQNRRYAI 74
                      66666677777766432456777777888888888888888878999***********865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.08E-9476IPR009057Homeodomain-like
SMARTSM003890.0021781IPR001356Homeobox domain
CDDcd000869.28E-41375No hitNo description
PROSITE profilePS500718.7781377IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-61380IPR009057Homeodomain-like
PfamPF167192.6E-41163290IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MGRPPSNGGP SFRFNPAEVA EMEAILQAHN ITMPAREVLV DLAEKFSSSS ERSGKFVVQM  60
KQVWNWFQNR RYAIRAKTAK SPGRYIAHPV PPSDPAAVKA PAKLSASPMP HSDPAAGRIM  120
PQAPQPIPTP QVTVRTMPQV PQPLPAPSVA VQSVGRSASD NTQMEFEAKS ARDGAWYDVA  180
SFLSHRSVEN GDPEVLVRFA GFGAEEDEWV NVRMHVRQRS LPCESSECVA VLPGDLILCF  240
QEGKEQALYY DAHVLDAQRR RHDVRGCRCR FLVRYDHDQS EEIVPLRKVC RRPETDYRLQ  300
QLNAESVKQQ KIGNDPTTGN TMKVYPPADT PQKAQTESKM KLAEPTQKQP APEYTIKPEP  360
NVFPMPQKPS TDSLTGNTLA ETTPKLMEEM AEKPVAETAE APQEEKIETP LAEITNKAPA  420
EAPEQPPAET TPKPLAYSTS KPAEATEELP AETTPNPLSA STSKPAEPTE ETPAETTLKP  480
PAASTLKPDE APEQPPAETT PEPPASSTSN SVEAPKDPPA ETTSIEETTL EPPAETTPEP  540
PADTTSKPVE QSEEPPTEAT LEPPADSTST PVEEASEEQP KAEEHVDAGP PAASTDQDNA  600
HV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A3e-481612941134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B3e-481612941134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A3e-481612941134SHH1 SAWADEE
4iur_B3e-481612941134SHH1 SAWADEE
4iut_A3e-481612941134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B3e-481612941134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A3e-481612941134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B3e-481612941134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A3e-481612941134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B3e-481612941134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015056344.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
SwissprotQ8RWJ71e-139SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A3Q7J6250.0A0A3Q7J625_SOLLC; Uncharacterized protein
STRINGSolyc10g007130.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88032124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-125sequence-specific DNA binding transcription factors;sequence-specific DNA binding