PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g003840.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 259aa    MW: 29084.8 Da    PI: 6.7086
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g003840.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.81.3e-2992149359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D  +WrKYGqK++kgs++pr+YYrC+s+ gCp+kk+ver+++dp+v++itY+++Hnh+
  Sopen10g003840.1  92 DSSTWRKYGQKPIKGSPYPRGYYRCSSSkGCPAKKQVERCHHDPNVLIITYSSDHNHP 149
                       6779**********************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.1E-3184151IPR003657WRKY domain
SuperFamilySSF1182904.32E-2686151IPR003657WRKY domain
SMARTSM007743.0E-3390150IPR003657WRKY domain
PfamPF031061.1E-2592149IPR003657WRKY domain
PROSITE profilePS5081130.0992151IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEGVLQKDPY LHKQEESFQR HSIKLKRYKK DPIAENSGEG SVSDDDETTE VNMPLPRKLS  60
KKGAKKRVIS VPIKDCDISR SNYKGEIYPP FDSSTWRKYG QKPIKGSPYP RGYYRCSSSK  120
GCPAKKQVER CHHDPNVLII TYSSDHNHPL PAAATKHRHP TTTFAATNTE QSTIFTDQPE  180
NDFIMAEVGA GELLGCFSYV GPTLLECTSP TMVGSTWVDD DVAFMLPIGE EDQSLFGDLG  240
ELPECSMVFR RYNRIVDGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-19921511674WRKY transcription factor 1
5w3x_B4e-1966151679Disease resistance protein RRS1
5w3x_D4e-1966151679Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055315.10.0probable WRKY transcription factor 65
TrEMBLA0A3Q7IB321e-145A0A3Q7IB32_SOLLC; Uncharacterized protein
STRINGSolyc10g007970.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74682232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.11e-56WRKY DNA-binding protein 65