PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen10g004110.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 226aa MW: 25808.3 Da PI: 7.6367

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen10g004110.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.3	0.00015	19	51	6	32
HHHHHHHHHHHHHHHHHHHCTSCCC........ CS HLH 6 nerErrRRdriNsafeeLrellPkas......k 32 + +E++RR+ +++ ++L +l+P+ + Sopen10g004110.1 19 KDVEKNRRNYMKNLCNQLFSLIPSTHhsqetmG 51 689*********************543555550 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.2E-4	17	48	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MEGCRRSSSA PVGVKLERKD VEKNRRNYMK NLCNQLFSLI PSTHHSQETM GLQDKIKSSE 60 IKLEKKKIHL EELSRMSGRK RPKSANSTNG PSPSTESSSS PQIQFHEMGP NMVVVLINGL 120 YNIATFNNII RLCHDEGVEV VYTNFTLNGN SMLQISHETK INMSSTMELR AANLCDKLKE 180 LLHGKSHDNE LESQLYLWDY IVEYELLKGY DVEFLPSTSH NPNMYN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	0.0	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015055436.1	1e-168	uncharacterized protein LOC107002017
TrEMBL	A0A3Q7IB92	1e-148	A0A3Q7IB92_SOLLC; Uncharacterized protein
STRING	Solyc10g008250.1.1	1e-148	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5297	14	27