PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen10g005940.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

M-type_MADS

Protein Properties

Length: 666aa MW: 75550.7 Da PI: 8.8516

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen10g005940.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	30.4	5.1e-10	523	549	14	40
HHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 14 skRrngilKKAeELSvLCdaevaviif 40 sk ++ ++KKA+ LS+LC+++va+ii+ Sopen10g005940.1 523 SKMQKALFKKASDLSILCGIQVAIIIL 549 677899*******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03732	9.0E-8	222	294	IPR005162	Retrotransposon gag domain
SuperFamily	SSF55455	2.09E-10	523	584	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	9.685	523	562	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.0E-8	523	549	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence Send to blast
MTFRKSCDFS DKDIDVVSAG LSHVGPITRC KFKNSGLDGS EYFTSLEAMK NNKSHTMVVS 60 AKPRDNLASV FSGESSQIGS NSGNSGDTMD SPTSMNVNAL MADSTNMDEK FAMLEQTIEA 120 LKKSVDEKNL HIAQLMNKLK TFTPRESSHV PTCPSGFDQQ NKDVEESLAN SKFQKEKQFA 180 SVAAQPKLQQ FDGKGNPRQH VANFIETCIN AGTHGDLLVK QFVRSLKGNA FDWYIDLEHE 240 SIDSWEQLEK EFLNRFYRTR LAVSMIKLTG TKQRKDEPVV DYINRWRSLS LDAKIVFLKY 300 HLWKCAFREF RKGMTSKTQT TDIIAMKATS VKVTTKSKLK EEEPSPQYPR EERRRPTLKE 360 LEAKVYPFLD ADVPMILEEL LTKKVIDLPE SKRLEEINKV GDPRYCKLHR VLGHPTSKCF 420 ILKKKIMMLE KMIVPVAQVP CIALEPSKGN RQVGKIKGNF DQKVFTLFEK SDYDFSNPAK 480 LGELKDEVTV KKLLCFPVFM ESKNSNVDSA VAKDKRGEGG KISKMQKALF KKASDLSILC 540 GIQVAIIILF INRQPIVFGK PDAESVINQF IEANHPTAPR FYMKMKKKEE ENKEKGKSVE 600 DDIQSQDFES PYLGSLLKLY EGLTEFENQL TKEIDLTQLN QEIEKHEDPK LMNVSSSSTL 660 PTNFSP

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence Send to blast

MTFRKSCDFS DKDIDVVSAG LSHVGPITRC KFKNSGLDGS EYFTSLEAMK NNKSHTMVVS  60
AKPRDNLASV FSGESSQIGS NSGNSGDTMD SPTSMNVNAL MADSTNMDEK FAMLEQTIEA  120
LKKSVDEKNL HIAQLMNKLK TFTPRESSHV PTCPSGFDQQ NKDVEESLAN SKFQKEKQFA  180
SVAAQPKLQQ FDGKGNPRQH VANFIETCIN AGTHGDLLVK QFVRSLKGNA FDWYIDLEHE  240
SIDSWEQLEK EFLNRFYRTR LAVSMIKLTG TKQRKDEPVV DYINRWRSLS LDAKIVFLKY  300
HLWKCAFREF RKGMTSKTQT TDIIAMKATS VKVTTKSKLK EEEPSPQYPR EERRRPTLKE  360
LEAKVYPFLD ADVPMILEEL LTKKVIDLPE SKRLEEINKV GDPRYCKLHR VLGHPTSKCF  420
ILKKKIMMLE KMIVPVAQVP CIALEPSKGN RQVGKIKGNF DQKVFTLFEK SDYDFSNPAK  480
LGELKDEVTV KKLLCFPVFM ESKNSNVDSA VAKDKRGEGG KISKMQKALF KKASDLSILC  540
GIQVAIIILF INRQPIVFGK PDAESVINQF IEANHPTAPR FYMKMKKKEE ENKEKGKSVE  600
DDIQSQDFES PYLGSLLKLY EGLTEFENQL TKEIDLTQLN QEIEKHEDPK LMNVSSSSTL  660
PTNFSP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	0.0	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2297	12	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	1e-09	AGAMOUS-like 62