PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g007120.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 184aa    MW: 20799.4 Da    PI: 5.7919
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g007120.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.91.3e-131665251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      +ien+s r +tfskRr g+ K A EL   Cd++  +++ s++g  y +ss
  Sopen10g007120.1 16 KIENESARFTTFSKRRSGLYKRACELVRECDVDLGIVMSSPKGIPYSFSS 65
                      79*****************************************9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.577767IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-15766IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-20878IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-12929IPR002100Transcription factor, MADS-box
PfamPF003192.2E-171663IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-122944IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-124465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MEHKKTAGRQ KISLAKIENE SARFTTFSKR RSGLYKRACE LVRECDVDLG IVMSSPKGIP  60
YSFSSPTSNV VIDRFINPTA NLSSSDRLVA AEARKKVSQF NDILKELDER EKIANEKLDR  120
LNEARDLGWW ESIDQLNVHD VMKLEAWLIS GEFKLNEHLE QLENGASSSS QIPSDDANIS  180
PNVF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027768160.11e-134agamous-like MADS-box protein AGL29
TrEMBLA0A3Q7ICS43e-92A0A3Q7ICS4_SOLLC; Uncharacterized protein
STRINGSolyc10g018110.1.11e-126(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-22AGAMOUS-like 61