PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g008890.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 206aa    MW: 23561.2 Da    PI: 7.785
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g008890.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-1858108256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        y+GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g+
  Sopen10g008890.1  58 TYRGVRKRN-WGKWVSEIREPRK---KSRIWLGTYSTAEMAARAHDVAALAIKGH 108
                       69****887.**********843...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.4258115IPR001471AP2/ERF domain
PfamPF008474.4E-1358108IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-2258116IPR016177DNA-binding domain
SMARTSM003802.5E-3658121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-3258115IPR001471AP2/ERF domain
PRINTSPR003677.6E-115970IPR001471AP2/ERF domain
CDDcd000182.45E-3259117No hitNo description
PRINTSPR003677.6E-118197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MKLQLQKSNS LDSSSSSSSY FDEDNINAKI LKEYNHDDNE NKRRKRDIQV DHDDKHPTYR  60
GVRKRNWGKW VSEIREPRKK SRIWLGTYST AEMAARAHDV AALAIKGHSA YLNFPYLTDQ  120
LPRPTSTSPK DIQIAAAKAA ATKFSRNVAE SITSPSTDKD DTFLDLPDLS INKVDQIDSY  180
CYPISTWHLV GADVGFWLEE PFLWHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-18551161173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055334.11e-152ethylene-responsive transcription factor ERF034-like
SwissprotQ8LBQ72e-58ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLM1AVT01e-107M1AVT0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000315221e-108(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-57ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]