PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g011530.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 360aa    MW: 40625.8 Da    PI: 7.65
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g011530.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21.1e-06326226
                      -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                      k++lC+ffa  G C  Gd C F+H+
  Sopen10g011530.1  3 KRVLCKFFAH-GACLKGDHCEFSHD 26
                      99****6666.*************5 PP
2zf-CCCH27.65.2e-093454526
                      --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                       C ++++ G C yG+rC++ H+
  Sopen10g011530.1 34 VCTYYQK-GSCAYGSRCRYDHV 54
                      6******.*************7 PP
3zf-CCCH21.54.2e-07142164326
                       S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                       +++C  fa+ G C++G++C++ Hg
  Sopen10g011530.1 142 RSICA-FAAAGNCPRGEKCPRVHG 164
                       56788.*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.009128IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-6127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-7326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-4326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.7932956IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-53153IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-43155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-43453IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-63454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.746139166IPR000571Zinc finger, CCCH-type
SMARTSM003560.0092140165IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-4142164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.9E-10201266IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.06E-12202271No hitNo description
PfamPF136391.0E-7207265IPR001841Zinc finger, RING-type
CDDcd001624.51E-4207266No hitNo description
SMARTSM001847.7E-8208264IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.519208265IPR001841Zinc finger, RING-type
PROSITE patternPS005180232241IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.122294323IPR000571Zinc finger, CCCH-type
SMARTSM003560.22294322IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MSKRVLCKFF AHGACLKGDH CEFSHDWNNP SNNVCTYYQK GSCAYGSRCR YDHVKLSRSQ  60
PSAQSSAQPQ QYLLSSSTPI NVSPGMGAHN ADVLPGISTE YLASSRPYDA SSQPAWNQKS  120
ELQDALEIDD MIELNSDNPA DRSICAFAAA GNCPRGEKCP RVHGDLCPTC GKHCLHPFRP  180
EEREEHIKTC ENKQKHLDLL KRSQEIECSV CLERVLSKST AAERKFGILS ECDHPFCVSC  240
IRNWRGSSSS GMDVNSALRA CPICRKLSYF VIPSVIWYFT KEEKEEIVDN YKNKLRSIDC  300
KHFDFGNGTC PFGTSCFYKH QHRDGRVEEM VLRHLGSEDG STVIAKNIRL SDFFRNLEIR
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089035.10.0putative RING-type E3 ubiquitin transferase C3H69
SwissprotQ5ZA071e-167C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A0V0IGK50.0A0A0V0IGK5_SOLCH; Putative zinc finger CCCH domain-containing protein 69-like
STRINGSolyc10g038000.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33862149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-148C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]