PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g012550.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 210aa    MW: 23763.8 Da    PI: 9.2674
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g012550.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.5e-1356101247
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++WT++E+  ++++   +G+g+W++Ia+ +   Rt  q+ s+ qky
  Sopen10g012550.1  56 NPWTEDEQIAFLKGLDFHGKGNWSKIAKDFVPSRTSTQVASHAQKY 101
                       69*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.60450106IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-1153103IPR009057Homeodomain-like
SMARTSM007173.8E-1054104IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-1355105IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-1356104IPR006447Myb domain, plants
PfamPF002493.2E-1156101IPR001005SANT/Myb domain
CDDcd001678.58E-1157102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MERNCTVCGG NGHNQRTCSE KGKSIKLFGV EITTATSAGG AMSKKDSMER RIKIGNPWTE  60
DEQIAFLKGL DFHGKGNWSK IAKDFVPSRT STQVASHAQK YFMRLLDANE RKYRKKSSVF  120
DLRLDQLEDT HDHAIVPLGN NYESQNVPSV IPNYYMMKRV LPLNWVYMYP YYHHDYASTS  180
ACATTFNKPL SGIFSSSNSS SKENNLDLTL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015054810.11e-160transcription factor MYBS3-like
TrEMBLA0A3Q7IWL81e-135A0A3Q7IWL8_SOLLC; Uncharacterized protein
STRINGSolyc11g050730.1.11e-135(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74541230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.16e-27MYB_related family protein