PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g013360.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 390aa    MW: 44092.3 Da    PI: 8.5422
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g013360.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.3e-171360148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g W++eEde+l++ v+++G g+W+++++   + R++k+c++rw +yl
  Sopen10g013360.1 13 KGLWSPEEDEKLINHVTKYGHGCWSSVPKLAALQRCGKSCRLRWINYL 60
                      678*******************************************97 PP
2Myb_DNA-binding44.63.4e-1466108145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       rg ++++E+ l+++++ +lG++ W+ Ia++++ gRt++++k+ w+
  Sopen10g013360.1  66 RGTFSQQEENLIIQLHSLLGNK-WSQIASRLP-GRTDNEIKNLWN 108
                       899*******************.*********.*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.4E-28463IPR009057Homeodomain-like
PROSITE profilePS5129425.315864IPR017930Myb domain
SuperFamilySSF466891.98E-2911107IPR009057Homeodomain-like
SMARTSM007177.3E-131262IPR001005SANT/Myb domain
PfamPF002499.7E-151360IPR001005SANT/Myb domain
CDDcd001672.50E-111660No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2464115IPR009057Homeodomain-like
PROSITE profilePS5129419.34565115IPR017930Myb domain
SMARTSM007176.7E-1365113IPR001005SANT/Myb domain
PfamPF002492.5E-1366108IPR001005SANT/Myb domain
CDDcd001676.46E-968108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MGRPCCYKKK LRKGLWSPEE DEKLINHVTK YGHGCWSSVP KLAALQRCGK SCRLRWINYL  60
RPDLKRGTFS QQEENLIIQL HSLLGNKWSQ IASRLPGRTD NEIKNLWNSS IKKKLRQKGI  120
DPNTHKLLSV VENEEKVSAI SMNIEKVSEG SSELNFIEDS NYGIKSKSSL VTMTMDDYPS  180
NTTTSAAPLT HKFFLERFVT THETSTASCN KPLDQLTSYL SFQQLNYGSN IGLSINSNTN  240
NLLLNSKNSE MFTHQFNSSI TNDNILTSPI AAIASNDSMR NGSSTSIELQ RNSSFFDSNA  300
FSWGTADYDK SEKEVNIHPS VPDPEDIKWS EYLHTQLLPG NAITNDQITQ DLYSAKSSIQ  360
FTTQGSLLQN QQQQPSLQTA NTYNKHYQRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-281011524128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055455.10.0transcription factor MYB61-like
TrEMBLM1BAE00.0M1BAE0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000407740.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.11e-82myb domain protein 61