PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen10g017020.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 180aa MW: 20981.2 Da PI: 6.2758

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen10g017020.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	101.5	1.2e-31	5	114	11	127
NAM 11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglk 103 deel+v++L++k++ +++ +vi+++++++++PwdL+ k+ ++ ++wyf+s+r + +++r+t++gyWk++g d+++ls+++++ g+k Sopen10g017020.1 5 DEELIVHFLHRKISLLPFHP-DVIPDLHLHSYDPWDLDGKAMSGGNKWYFYSRRTH------ETTRITSNGYWKSSGVDETILSTSNHNLGMK 90 9**************999.99**********977778899**9977......5789*********************** PP NAM 104 ktLvfykgrapkgektdWvmheyr 127 k +fy gr p+g+kt+W+m+ey+ Sopen10g017020.1 91 KYYTFYMGRPPQGHKTNWLMQEYS 114 *********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	37.421	1	148	IPR003441	NAC domain
SuperFamily	SSF101941	4.97E-39	4	147	IPR003441	NAC domain
Pfam	PF02365	7.0E-16	5	114	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MSSPDEELIV HFLHRKISLL PFHPDVIPDL HLHSYDPWDL DGKAMSGGNK WYFYSRRTHE 60 TTRITSNGYW KSSGVDETIL STSNHNLGMK KYYTFYMGRP PQGHKTNWLM QEYSHISHSS 120 PSSSSSRRRR SQSKIDYSKW VICRVYESNS CDSDENELSC LDEVFLSLDD LDDDEISLPH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	5e-33	5	150	30	170	NAC domain-containing protein 19
3swm_B	5e-33	5	150	30	170	NAC domain-containing protein 19
3swm_C	5e-33	5	150	30	170	NAC domain-containing protein 19
3swm_D	5e-33	5	150	30	170	NAC domain-containing protein 19
3swp_A	5e-33	5	150	30	170	NAC domain-containing protein 19
3swp_B	5e-33	5	150	30	170	NAC domain-containing protein 19
3swp_C	5e-33	5	150	30	170	NAC domain-containing protein 19
3swp_D	5e-33	5	150	30	170	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	1e-157	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015055302.1	1e-127	NAC domain-containing protein 104-like
Swissprot	Q8GWK6	3e-63	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A3Q7IER4	6e-99	A0A3Q7IER4_SOLLC; Uncharacterized protein
STRING	Solyc10g047060.1.1	1e-99	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3766	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	3e-53	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]