PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g019900.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 172aa    MW: 19484 Da    PI: 10.5943
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g019900.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.000754668123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C++ F ++  L  H++ H
  Sopen10g019900.1 46 FSCNFCKRKFYSSQALGGHQNAH 68
                      89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.68E-74273No hitNo description
PROSITE profilePS5015710.994673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MRRAEDGYQG TSVLDQGEWL NLSLGRNLPS ISKESESHIP TSGKVFSCNF CKRKFYSSQA  60
LGGHQNAHKR ERGTVRQYQS QRMMTMMALP INNPMFRSLG MLPHSLLHKS SRDARATAAT  120
FSEASAGYQR TSLTNQMDRS FDLKWPGSFQ LNQQQTKDHT SNPTKLDLNL KL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015056199.11e-127zinc finger protein 2-like
TrEMBLA0A3Q7IFY31e-125A0A3Q7IFY3_SOLLC; Uncharacterized protein
STRINGSolyc10g049870.1.11e-126(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32691313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.16e-18zinc-finger protein 1