PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g020770.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 298aa    MW: 33771.9 Da    PI: 5.885
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g020770.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-112242641055
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r+RR+riN+++ +L++l+P+      +K++ +++Le+Av+Y+k Lq
  Sopen10g020770.1 224 RKRRERINERLKTLQSLIPNG-----TKVDISTMLEEAVQYVKFLQ 264
                       9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-14214280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.688214263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-13219273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.31E-12223268No hitNo description
PfamPF000108.1E-9224264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEHVVSMSEG DWSSFSGMCF TEEADFMAQL LGNCSFPNEL PSNSGYWNIG HESNIGSSGG  60
REHSSFFFPP PSHESHYSIN SRPMLMRNDS SITTERGVMD NDNPIEADEY FVNNMEFDEN  120
TAEPLLDGNS LQLGRIDKID HSPTESSKKR ARLHCHVPKN KRSTKLQTEV KTVEMDMKSK  180
TVLQRQNSMV SCCSEDESNV SLELRRKSRA SRGSATDPQS LYARKRRERI NERLKTLQSL  240
IPNGTKVDIS TMLEEAVQYV KFLQLQIKLL SSDDLWMYAP IAYNGMDLGL DLRIGNPK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204226RRKSRASRGSATDPQSLYARKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015054952.10.0transcription factor bHLH139-like
SwissprotQ7XHI91e-63BH084_ARATH; Transcription factor bHLH84
TrEMBLA0A3Q7IGN70.0A0A3Q7IGN7_SOLLC; Uncharacterized protein
STRINGSolyc10g049720.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.13e-63bHLH family protein