PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g022550.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 162aa    MW: 18864.7 Da    PI: 9.5085
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g022550.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.17.3e-111563149
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      k+ien+     +fskRrng++K A+ L    d+++ +i+fs+tgk + +
  Sopen10g022550.1 15 KKIENEKALLSSFSKRRNGLFKAANNLVKEFDVDIGIIVFSPTGKPHSF 63
                      6899999999**********************************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.684767IPR002100Transcription factor, MADS-box
SMARTSM004325.4E-17766IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-19878IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-9929IPR002100Transcription factor, MADS-box
PfamPF003191.3E-171663IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-92944IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-94465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MENKKTKGRQ KIPMKKIENE KALLSSFSKR RNGLFKAANN LVKEFDVDIG IIVFSPTGKP  60
HSFFHPTVDA VISRFQNPDM QLSDETHLAM VFARNSVNQL EKKLEELDIK EKIESDRTNY  120
LDQMTKTRQK EFCNFGTCMP IFDEPNLNFK QYGRFAIMEF GF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015054985.14e-91agamous-like MADS-box protein AGL62
TrEMBLA0A3Q7JBP73e-86A0A3Q7JBP7_SOLLC; Uncharacterized protein
STRINGSolyc10g050900.1.15e-87(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.13e-21M-type_MADS family protein