PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g025590.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 277aa    MW: 32011.6 Da    PI: 7.9266
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g025590.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.64.4e-4851313128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                       pGfrFhPt+eelv +yLk+k+ g+k ++ +vi  ++iy+++PwdLp  ++ +e+ewyfF+ rd+k+ +g r+nr+t++g+Wkatg+dk+++  
  Sopen10g025590.1   5 PGFRFHPTEEELVEFYLKNKILGRKSRC-DVIGLLNIYRHDPWDLPGLATIGEREWYFFVARDRKHGNGGRPNRTTEKGFWKATGSDKKIIGL 96 
                       9************************999.99***************8777899*************************************976 PP

               NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++ +glkktLvfy+grap+g+ktdWvm+e+rl
  Sopen10g025590.1  97 snPKNIIGLKKTLVFYTGRAPRGSKTDWVMNEFRL 131
                       446778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.5533149IPR003441NAC domain
SuperFamilySSF1019412.35E-564149IPR003441NAC domain
PfamPF023651.7E-265131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEDLPGFRFH PTEEELVEFY LKNKILGRKS RCDVIGLLNI YRHDPWDLPG LATIGEREWY  60
FFVARDRKHG NGGRPNRTTE KGFWKATGSD KKIIGLSNPK NIIGLKKTLV FYTGRAPRGS  120
KTDWVMNEFR LPDTVSWPKD IVLCKIYRKA TSLKVLEQRA AIEEEMKHVH SSPCSTTLQP  180
MDAMSFCNEH HELTDKSPDL FTSISKDEVD DDRLSVTENK EKSNCFRPKL LNGQDSLAEL  240
QVPKFSMDFS QDPVWMQLRS PWLDNFILTP SAFVHNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-46514917168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0144030.0BT014403.1 Lycopersicon esculentum clone 133708R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089544.10.0NAC domain-containing protein 22-like
SwissprotQ10S651e-91NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A3Q7IHY90.0A0A3Q7IHY9_SOLLC; Uncharacterized protein
STRINGSolyc10g055760.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35312248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-104NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]