PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g028790.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 236aa    MW: 27159.9 Da    PI: 7.7057
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g028790.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.71.1e-062347123
                      EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                      y+C+   Cgk+F+  s L++H  +H
  Sopen10g028790.1 23 YVCSeaGCGKVFKYASKLRKHEDSH 47
                      99*******************9888 PP
2zf-C2H221.46.7e-07114138223
                       EET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                       kC+  dC+ +Fs++snL +Hi+  H
  Sopen10g028790.1 114 KCEfqDCPHTFSTRSNLAQHIKAvH 138
                       79999****************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.3E-82047IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.36E-52147No hitNo description
SMARTSM003550.0012347IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4062352IPR007087Zinc finger, C2H2
PROSITE patternPS0002802547IPR007087Zinc finger, C2H2
SMARTSM0035565580IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805780IPR007087Zinc finger, C2H2
SMARTSM003552183104IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.42E-1095151No hitNo description
SMARTSM003550.001113138IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.422113143IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.7E-6114140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280115138IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-5141166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559.6144170IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280146170IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MTRHVKEMHD QPASADVDLP KEYVCSEAGC GKVFKYASKL RKHEDSHVQL ETVEAMCLEP  60
GCMKHFTNEK CLKEHIESCH QHIDCEICGT KQLKKNIKRH LRTHEEGPTS ERIKCEFQDC  120
PHTFSTRSNL AQHIKAVHVG SKPFSCSISG CGMKFAFKHV RDKHEQSGCH IYTPGDFEEV  180
DEQFLSRPRG GRKREPTLFE SIMRKRITPP SGIDPVFNQT PEYLSWLRSM ESDNQM
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8821790.0DQ882179.1 Lycopersicon esculentum transcription factor IIIA mRNA, complete cds.
GenBankDQ8821800.0DQ882180.1 Lycopersicon esculentum transcription factor IIIA mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055634.11e-175transcription factor IIIA
SwissprotQ84MZ41e-85TF3A_ARATH; Transcription factor IIIA
TrEMBLQ06HM71e-170Q06HM7_SOLLC; Transcription factor IIIA
STRINGSolyc10g077110.1.11e-171(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.17e-89transcription factor IIIA