PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g029340.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 402aa    MW: 45379.1 Da    PI: 6.4216
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g029340.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.17.4e-32225279155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       k+r+rWt++LH+rFve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR 
  Sopen10g029340.1 225 KARIRWTQDLHDRFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRN 279
                       68****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.434222282IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-28223280IPR009057Homeodomain-like
SuperFamilySSF466891.79E-16223279IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-24225280IPR006447Myb domain, plants
PfamPF002493.0E-8229278IPR001005SANT/Myb domain
PfamPF143794.1E-20309356IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MSIQNYELAS DCNLEFPQMG FCFQPENSAE NGCQQQQQQN FWPSTDSSSS RTIISRIGSS  60
PSAFFATERY LGLTQYEYQD NNNSCTQLSK NLDPQTTSFT QQCGHGFLAD SSARVDTDFP  120
KISMPSFIRS QFSSSQPLST EGLYGNPFSN LSEKERILLL KSKLFREIDS SNRQPASIPF  180
QGNQDYGVSN NTCGFNLVHI RQQSGSQSAN SFNNSGCSGG SLSSKARIRW TQDLHDRFVE  240
CVNRLGGADK ATPKAILKLM DSEGLTIFHV KSHLQKYRNA KFIPESTEGR SGKTDCPNNV  300
TQIDSKTGMQ IKEALHMQLE VQRRLHEQLE IQRKLQLRIE EQGEQLKKIF EQQQQTTRSL  360
LETRNSSISS PADQFTPHED EVFAAESFNN THFQSNISYN DM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-23225282259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-23225282259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-23225282158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-23225282158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-23225282158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-23225282158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-23225282259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-23225282259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-23225282259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-23225282259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-23225282259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-23225282259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089588.10.0myb family transcription factor PHL5
TrEMBLA0A3Q7IKJ30.0A0A3Q7IKJ3_SOLLC; Uncharacterized protein
STRINGSolyc10g078720.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24912458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.13e-71G2-like family protein