PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g029600.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 206aa    MW: 23915.4 Da    PI: 9.3185
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g029600.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.6e-0580102123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C +C +sF+++  L  H++ H
  Sopen10g029600.1  80 YECYYCFRSFPTSQALGGHQNAH 102
                       99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.56E-678107No hitNo description
PROSITE profilePS5015711.2480107IPR007087Zinc finger, C2H2
PfamPF139121.6E-580104IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MEKIGREAVD YMNVKSFSQP PLRKKSIRLF GKEFSVGDST NMSESTDKNP LHHEPKPNTM  60
SISANRIDKR GHVDEISRKY ECYYCFRSFP TSQALGGHQN AHKKERQNAK LSHLQSSIVH  120
ETNRHRFGEP SAAATRLTHH HSTWSNIKNN NVYSPNYNEA FWQIPPTIHH YQNNINPSSS  180
FSHDSFFPND EEKREFQNHV SLDLHL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055520.11e-154zinc finger protein 8-like
TrEMBLK4D2D81e-143K4D2D8_SOLLC; Uncharacterized protein
STRINGSolyc10g078970.1.11e-144(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14731526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.11e-22C2H2 family protein