PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g029610.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 232aa    MW: 26432.3 Da    PI: 6.7937
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g029610.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2188.1e-0682104123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C++C +sF+++  L  H++ H
  Sopen10g029610.1  82 YECHYCFRSFPTSQALGGHQNAH 104
                       99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.18E-680109No hitNo description
PfamPF139123.0E-682106IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.42782109IPR007087Zinc finger, C2H2
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEKIEREALD FMNVESSSQL SITLPVNEKP IRLFGKEFGG GDSINMTTTN MSESIDNNPF  60
YDEPNIVKEN HINKNVEIMR KYECHYCFRS FPTSQALGGH QNAHKKERQN AKRHDKPSIY  120
GITNRNRLGE ATVSTRTYYH STWTNINSNT LRFDGNGHNV NVISPINGNP LTFWQIPPAV  180
NQYISSSSDN NNNLVFSSDD LIRNPPMVNI SNNCEYKPKG EVQDHVSLDL HL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055472.11e-174zinc finger protein 8-like
TrEMBLK4D2E01e-155K4D2E0_SOLLC; Uncharacterized protein
STRINGSolyc10g078990.1.11e-156(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14731526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41940.14e-33zinc finger protein 8