PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g029770.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 225aa    MW: 25838.9 Da    PI: 4.1272
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g029770.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM24.19.6e-081468250
               NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpk.......k 50
                        G+rF Ptde+l+  yL + v+++++ + + i+  +iy   +Pw+L +       k
  Sopen10g029770.1 14 ELGVRFLPTDEQLI-SYLIRFVASNNFIC-NDIPFENIYGRkKPWELMEaeyslddK 68
                      57************.9**********988.5699999996549****7334444440 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-81062IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MRIGRINDDS PDLELGVRFL PTDEQLISYL IRFVASNNFI CNDIPFENIY GRKKPWELME  60
AEYSLDDKVI KPLKNRGIMK HEDVVLCFIR RKESGHGNDD DDDNDDDTQP QGPNETGYGT  120
DQLAQQMVDN SVQNVEETTS TGNVLLKLKY PNFLIHLEGL QVVVLWLAHL DTFPQSVLQF  180
AEEVDERYDN TNQLPIWADD HQLPQQIVMF VMMNEGNINA ESVVP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-133HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027768232.16e-41NAC domain-containing protein 2-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1421348