PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g029800.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YA
Protein Properties Length: 241aa    MW: 27395.7 Da    PI: 9.8249
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g029800.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA93.62.4e-2992148158
         CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                       +ep+YVNaKQy++Il+RRq Rak+  ++k+  ksrkpylheSRh+hA+rR+R  gGrF
  Sopen10g029800.2  92 EEPMYVNAKQYHGILRRRQLRAKAVLQQKV-VKSRKPYLHESRHRHAMRRARDGGGRF 148
                       69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.2E-3390151IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.79291151IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.8E-2693148IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.5E-2294116IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.5E-22125148IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MFQKSDSDSK REGKHVEFIP PIMGENLRAA NQFELITPSS IAFKSYPFSE VPQYSGGNVT  60
IACGEPMVNQ NMERSLIVHH NGRMILPVEV KEEPMYVNAK QYHGILRRRQ LRAKAVLQQK  120
VVKSRKPYLH ESRHRHAMRR ARDGGGRFLN TKKKIQSTTT TTNNNTTPSS KGKSSLDSNS  180
SPNYLLNYEG DIGSSNNTNS VEGFQFQSGI HNTTENLQLG CHYQWNLNDN NHCNCMHSEH  240
F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-2092154264NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132141RHRHAMRRAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089489.10.0nuclear transcription factor Y subunit A-7-like isoform X1
TrEMBLA0A3Q7IKS31e-179A0A3Q7IKS3_SOLLC; Uncharacterized protein
STRINGSolyc10g079150.1.11e-162(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA133921516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.43e-28nuclear factor Y, subunit A1