PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g030030.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 229aa    MW: 26729.1 Da    PI: 8.7562
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g030030.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.52.4e-34241152102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl k+y ++ed++++++isw+++g++f+v ++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+k+++++         weF+++ F+kg+k+ll
  Sopen10g030030.1  24 FLLKTYMLVEDPATDDVISWNSDGSAFIVRQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKITTSQ---------WEFSNDLFRKGDKNLL 107
                       9****************************************************************998.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+rkk 
  Sopen10g030030.1 108 CDIRRKKA 115
                       *****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.3E-3518108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.3E-5020113IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.13E-3221113IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.5E-192447IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.7E-3124113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.5E-196274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.5E-197587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGELGDECER NLLEYVRKAS TSPFLLKTYM LVEDPATDDV ISWNSDGSAF IVRQPAEFAR  60
DLLPTLFKHS NFSSFVRQLN TYGFRKITTS QWEFSNDLFR KGDKNLLCDI RRKKAWTNKQ  120
QPNKNNRKES EDEDQKSSSS AYNSSSSFEY NSLVDENKRL KMENGELSYE LSLVNKKCKE  180
LIDLVAILSK KSKEEEKKEG QNGKRPMLFG VRLEVEEEIE RKRKRVRVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2021131129Heat shock factor protein 1
5d5v_B2e-2021131129Heat shock factor protein 1
5d5v_D2e-2021131129Heat shock factor protein 1
5d5w_B2e-20211131104Putative transcription factor
5d5x_B2e-20211131104Putative transcription factor
5d5x_E2e-20211131104Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055462.11e-167heat stress transcription factor B-3-like
SwissprotO222302e-61HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLM1AEL41e-145M1AEL4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000210891e-146(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44232241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.13e-55heat shock transcription factor B3