PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g030310.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 228aa    MW: 26248.6 Da    PI: 8.615
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g030310.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.3e-1391145154
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54 
                       ++ +hn+ Er+RR+++N  +++Lr+llP+++ k ++kKls  +++  + eYI +L
  Sopen10g030310.1  91 KKLNHNASERNRRKKMNFLYSTLRSLLPPPTnKHQKKKLSFPATVSYVQEYIPEL 145
                       6789*************************665888888**************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.94E-1390161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-1190150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.98690145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.77E-890150No hitNo description
PfamPF000101.4E-1091145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-696151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MLAFSSSNMF PTMNSIAWSF EEPLCYDDHH KNTTPITTPQ FQTDQNNKLF EGLRADNTIE  60
LPLSHHHQQQ CLKESEFDVD ELGVERSLME KKLNHNASER NRRKKMNFLY STLRSLLPPP  120
TNKHQKKKLS FPATVSYVQE YIPELKKEIE RLSKRKDFLL SKKSNYSLLK IDDNNKRKLI  180
IGGTSCNSST TSICASQLSN TQVLLAFSDA RTNRNGHSDF EDEAFSNV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055301.11e-151transcription factor bHLH100-like
TrEMBLA0A3Q7IL291e-140A0A3Q7IL29_SOLLC; Uncharacterized protein
STRINGSolyc10g079680.1.17e-75(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22262256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04150.14e-22bHLH family protein