PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen10g030860.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB_related

Protein Properties

Length: 886aa MW: 97404.6 Da PI: 6.6965

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen10g030860.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.4	1.6e-08	826	877	1	46
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg....kgRtlkqcksrwqk 46 +++WT+ E+e+l+++ ++ +Wk+I + g kgRt+ ++k++w++ Sopen10g030860.1 826 KLPWTKMEEEILKEGLLRFSHFhdRWKRILEFGGdvfmKGRTAGDLKDKWRN 877 689*************985499************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	1.77E-7	443	498	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	4.4E-8	444	498	IPR013083	Zinc finger, RING/FYVE/PHD-type
SMART	SM00249	3.5E-6	450	495	IPR001965	Zinc finger, PHD-type
PROSITE pattern	PS01359	0	451	494	IPR019786	Zinc finger, PHD-type, conserved site
PROSITE profile	PS50090	7.445	821	879	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.3E-9	821	882	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.14E-8	822	880	IPR009057	Homeodomain-like
SMART	SM00717	2.9E-4	825	881	IPR001005	SANT/Myb domain
CDD	cd11660	5.65E-10	828	880	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 886 aa Download sequence Send to blast
MATTLACASS LPWIWVIEAL ASSREIDTSL LINLVKKTPA ISDDLGRNAR EMVSLRLLES 60 LFVRENSDAN SVASVPGDKV ELDPSRDCED VLRCILLEVS ASNLKTATPD MLKWDVLSFI 120 TKKRSILSKS HLQQFKDAIV KSTTPFSTSL KERSGLELGN HYRDGVTADA IDSDGFKQGH 180 KIGGVNTRHA APTENLDTLI QGNKNGLQEN QPGSTLLPVK RSFDAPTAYE IEVNKTKAIP 240 EISSDPCAKA AKKFKQDVAG FIQNTVPDLI SSQRGGVPAE SCGGSQSIVQ KRNSEGDGTL 300 EANGCLKDGK AKHAGSASVL CGIDSSIKDL LPQRMSSDKK FKNIGSSSNC CPEQGISCDS 360 SLRVIQQDSR TCGSKGDLDY NLPRDLQNGE PSNADKENIE QSRESEFSSD TDEYHYESTA 420 LASRKNDFLN LQYAQGEDSL AIIDCTELNL CVKCNKGENL LVCSSDTCSL VVHESCLVSA 480 PNFDYKGSFY CPFCAYSRAI SEYLECKKKV SLARNDLAAF IGMGAGKQSK NSLPRSQGMK 540 KHQSREGKNS LNEVTEAGSA PADRSSVGAQ VIQTSAPKPE PSLPRNEKMR NSLNEVTEAG 600 SAPADMSSVR AQVMQTGAPQ PGTSLPRNDS GRNSLNEVRK AGSAPADRSS VGAQLMQTGS 660 PQPEASLPEQ CLVAGQQPDK SPLRCQRSRH RSRQNQSRSE EELCHDENRN KNSLEKAEPA 720 GSHRSRQNQS REEEELCHDE NRNKNSLEKA EPAGSHPVTR NSMHAEVTQI HPPQPHVPHE 780 HMCQESSSIE VSSEEEQDEI GSRYHVQFRN QENNSCPWIP QMRRKKLPWT KMEEEILKEG 840 LLRFSHFHDR WKRILEFGGD VFMKGRTAGD LKDKWRNISK ADEKAT

Sequence ? help Back to Top

Protein Sequence Length: 886 aa Download sequence Send to blast

MATTLACASS LPWIWVIEAL ASSREIDTSL LINLVKKTPA ISDDLGRNAR EMVSLRLLES  60
LFVRENSDAN SVASVPGDKV ELDPSRDCED VLRCILLEVS ASNLKTATPD MLKWDVLSFI  120
TKKRSILSKS HLQQFKDAIV KSTTPFSTSL KERSGLELGN HYRDGVTADA IDSDGFKQGH  180
KIGGVNTRHA APTENLDTLI QGNKNGLQEN QPGSTLLPVK RSFDAPTAYE IEVNKTKAIP  240
EISSDPCAKA AKKFKQDVAG FIQNTVPDLI SSQRGGVPAE SCGGSQSIVQ KRNSEGDGTL  300
EANGCLKDGK AKHAGSASVL CGIDSSIKDL LPQRMSSDKK FKNIGSSSNC CPEQGISCDS  360
SLRVIQQDSR TCGSKGDLDY NLPRDLQNGE PSNADKENIE QSRESEFSSD TDEYHYESTA  420
LASRKNDFLN LQYAQGEDSL AIIDCTELNL CVKCNKGENL LVCSSDTCSL VVHESCLVSA  480
PNFDYKGSFY CPFCAYSRAI SEYLECKKKV SLARNDLAAF IGMGAGKQSK NSLPRSQGMK  540
KHQSREGKNS LNEVTEAGSA PADRSSVGAQ VIQTSAPKPE PSLPRNEKMR NSLNEVTEAG  600
SAPADMSSVR AQVMQTGAPQ PGTSLPRNDS GRNSLNEVRK AGSAPADRSS VGAQLMQTGS  660
PQPEASLPEQ CLVAGQQPDK SPLRCQRSRH RSRQNQSRSE EELCHDENRN KNSLEKAEPA  720
GSHRSRQNQS REEEELCHDE NRNKNSLEKA EPAGSHPVTR NSMHAEVTQI HPPQPHVPHE  780
HMCQESSSIE VSSEEEQDEI GSRYHVQFRN QENNSCPWIP QMRRKKLPWT KMEEEILKEG  840
LLRFSHFHDR WKRILEFGGD VFMKGRTAGD LKDKWRNISK ADEKAT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	0.0	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015056455.1	0.0	uncharacterized protein LOC107002801 isoform X1
Refseq	XP_015056456.1	0.0	uncharacterized protein LOC107002801 isoform X1
Refseq	XP_015056457.1	0.0	uncharacterized protein LOC107002801 isoform X1
Refseq	XP_027768302.1	0.0	uncharacterized protein LOC107002801 isoform X1
TrEMBL	A0A3Q7IKX5	0.0	A0A3Q7IKX5_SOLLC; Uncharacterized protein
STRING	PGSC0003DMT400060973	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3406	8	9