PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g031000.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 374aa    MW: 42327.4 Da    PI: 5.2998
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g031000.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.54.2e-30218272155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       k+r+rW+++LH+rF+e+v++LGG++kAtPk+il+lm+ ++Ltl+hvkSHLQkYR 
  Sopen10g031000.1 218 KTRIRWNEDLHDRFLECVNRLGGADKATPKQILNLMDSDCLTLDHVKSHLQKYRN 272
                       68****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.561215275IPR017930Myb domain
SuperFamilySSF466891.97E-15216272IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-26216273IPR009057Homeodomain-like
TIGRFAMsTIGR015578.6E-25218273IPR006447Myb domain, plants
PfamPF143791.0E-19301347IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MSIQRFIITQ GNEYFSSDYS FEVPKNSAQN LVDQEIQYPS YMGTCLPIAS SSSSSIINCI  60
GSPSSAFFAT EPCLGLTQYD NQYDTSELIK NCDVQMSSFD PQQCKNGILE DPLVQAEPDF  120
RHEISMPSFI RTEFSTSPFS DVSEAEKESL LHLKNELLGE FDTSYRRHPS LPFDGNQDYC  180
LSHDLCCSQL ANTREKPASP SLTFHNSASS GVFHKPSKTR IRWNEDLHDR FLECVNRLGG  240
ADKATPKQIL NLMDSDCLTL DHVKSHLQKY RNAKHPESAG KSEKRNSSDA MTDIESKTGR  300
EIKEALKMQL EVQRCLHEQL ETQRTLQMRI EEQAKKLKMI LDQQRKTNMT LLGTRNSNIS  360
SPGVEILVVE DSDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-17218275259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-17218275259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-17218275158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-17218275158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-17218275158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-17218275158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-17218275259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-17218275259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-17218275259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-17218275259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-17218275259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-17218275259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055275.10.0uncharacterized protein LOC107001828
TrEMBLA0A3Q7IKR50.0A0A3Q7IKR5_SOLLC; Uncharacterized protein
STRINGSolyc10g080460.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24912458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.11e-54G2-like family protein