PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g033040.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 259aa    MW: 29999 Da    PI: 8.2238
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g033040.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix90.81.5e-28100185187
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                       rW++qe+l+L+e+r++++++++++ +k+plW+evs+ m +e g++rs k+C+ek+enl k+ykk+k+g+ +r  ++ ++++yf+qlea
  Sopen10g033040.1 100 RWPRQETLKLLEVRSQLDSKFKETIQKGPLWDEVSRIMsEEYGYQRSGKKCREKFENLYKYYKKTKDGKAGR--QDGKHYRYFRQLEA 185
                       8*************************************8889****************************98..55667*******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.1293158IPR017877Myb-like domain
PfamPF138371.6E-19100186No hitNo description
CDDcd122036.65E-24100165No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDDENQYGMM DLTQYLNGRP LFSSVSPDLL CSNQHFDMLM TSTTTTTATT HVPQHENYFP  60
HHHHYHYHHG FHPESSTVAG STVSGGCALS AMETEGGNGR WPRQETLKLL EVRSQLDSKF  120
KETIQKGPLW DEVSRIMSEE YGYQRSGKKC REKFENLYKY YKKTKDGKAG RQDGKHYRYF  180
RQLEALYGKT SNTINTNTFH QYQVHYNQQP HHCPKVSDDN LYDSSDSDDS DNSSNDDSKR  240
KNSKKKGKRS WKGTDLCKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055429.10.0trihelix transcription factor PTL-like
TrEMBLM1CQ851e-117M1CQ85_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000724041e-117(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30632451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.17e-52Trihelix family protein