PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen10g033340.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 398aa MW: 46534.1 Da PI: 10.2286

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen10g033340.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.5	4e-15	8	55	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W +eEde+l v+ +G ++W++ a+t g++R++k+c++rw++yl Sopen10g033340.1 8 RGQWLEEEDERLSMMVAVFGERRWDALAKTSGLKRSGKSCRLRWLNYL 55 899*******************************************97 PP
2	Myb_DNA-binding	47.1	5.6e-15	64	106	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T++E+ l++++ kq+G++ W++Ia+ ++ gRt++ +k++w+++l Sopen10g033340.1 64 ITADEERLIIRLQKQFGNK-WSKIAKQLP-GRTDNKIKNYWRSHL 106 59***************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.826	3	55	IPR017930	Myb domain
SuperFamily	SSF46689	5.87E-26	6	102	IPR009057	Homeodomain-like
SMART	SM00717	5.2E-11	7	57	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-12	8	55	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.6E-20	9	62	IPR009057	Homeodomain-like
CDD	cd00167	2.46E-7	11	55	No hit	No description
PROSITE profile	PS51294	25.824	56	110	IPR017930	Myb domain
SMART	SM00717	1.1E-14	60	108	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-23	63	109	IPR009057	Homeodomain-like
Pfam	PF00249	3.8E-13	64	106	IPR001005	SANT/Myb domain
CDD	cd00167	3.85E-10	65	106	No hit	No description
PROSITE profile	PS51144	46.711	159	393	IPR001148	Alpha carbonic anhydrase
SuperFamily	SSF51069	4.19E-68	160	390	IPR001148	Alpha carbonic anhydrase
Gene3D	G3DSA:3.10.200.10	2.5E-65	160	390	IPR001148	Alpha carbonic anhydrase
SMART	SM01057	5.2E-66	163	390	IPR001148	Alpha carbonic anhydrase
Pfam	PF00194	3.0E-44	166	390	IPR001148	Alpha carbonic anhydrase
CDD	cd03124	1.70E-94	170	391	No hit	No description
PROSITE pattern	PS00162	0	254	270	IPR018338	Carbonic anhydrase, alpha-class, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006730	Biological Process	one-carbon metabolic process
GO:0003677	Molecular Function	DNA binding
GO:0004089	Molecular Function	carbonate dehydratase activity
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MQEEELRRGQ WLEEEDERLS MMVAVFGERR WDALAKTSGL KRSGKSCRLR WLNYLRPNLK 60 HGHITADEER LIIRLQKQFG NKWSKIAKQL PGRTDNKIKN YWRSHLRKKT LIYKQESSES 120 NTSNSEQRSS ILKRDTVLNS SSNSEDNFSE KAQEVEDERE FDYVEKSEKG PKMWGKLKKE 180 WEACNNGEMQ SPIDMSHERV RIIQKPDKRH YKLCNATVKN RGHDISLQWH GDAGSVTING 240 TNYPLQQAHW HSPSEHTVNG RRYDMEMHMV HLNENATNKI VVIGVLYKIG KPDRFLSKLI 300 RNISSMIDKK DEVKNAGMID PREIKIGSRK YYRYMGSLTV PPCTEGVIWT IKKKVRTVSR 360 AQVKMLREAV HDYAERNGRP LQPKNKRPIY LMAPDDTA

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MQEEELRRGQ WLEEEDERLS MMVAVFGERR WDALAKTSGL KRSGKSCRLR WLNYLRPNLK  60
HGHITADEER LIIRLQKQFG NKWSKIAKQL PGRTDNKIKN YWRSHLRKKT LIYKQESSES  120
NTSNSEQRSS ILKRDTVLNS SSNSEDNFSE KAQEVEDERE FDYVEKSEKG PKMWGKLKKE  180
WEACNNGEMQ SPIDMSHERV RIIQKPDKRH YKLCNATVKN RGHDISLQWH GDAGSVTING  240
TNYPLQQAHW HSPSEHTVNG RRYDMEMHMV HLNENATNKI VVIGVLYKIG KPDRFLSKLI  300
RNISSMIDKK DEVKNAGMID PREIKIGSRK YYRYMGSLTV PPCTEGVIWT IKKKVRTVSR  360
AQVKMLREAV HDYAERNGRP LQPKNKRPIY LMAPDDTA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4twl_A	7e-70	158	392	2	236	Dioscorin 5
4twl_B	7e-70	158	392	2	236	Dioscorin 5
4twm_A	7e-70	158	392	2	236	Dioscorin 5
4twm_B	7e-70	158	392	2	236	Dioscorin 5
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Functional Description ? help Back to Top
Source	Description
UniProt	Reversible hydration of carbon dioxide. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	1e-115	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015088972.1	0.0	alpha carbonic anhydrase 7-like
Swissprot	Q8L817	3e-96	ATCA7_ARATH; Alpha carbonic anhydrase 7
TrEMBL	A0A3Q7IMY6	0.0	A0A3Q7IMY6_SOLLC; Uncharacterized protein
STRING	Solyc10g083890.1.1	0.0	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53200.1	2e-48	myb domain protein 27

Publications ? help Back to Top
Fabre N,Reiter IM,Becuwe-Linka N,Genty B,Rumeau D Characterization and expression analysis of genes encoding alpha and beta carbonic anhydrases in Arabidopsis. Plant Cell Environ., 2007. 30(5): p. 617-29 [PMID:17407539] Lucca N,León G Arabidopsis ACA7, encoding a putative auto-regulated Ca(2+)-ATPase, is required for normal pollen development. Plant Cell Rep., 2012. 31(4): p. 651-9 [PMID:22044965]