PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen10g034970.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 304aa MW: 33260.6 Da PI: 4.4665

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen10g034970.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00061	279	300	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C+ C+++F + L++H + H Sopen10g034970.1 279 CKTCNRTFGSENALESHSKAkH 300 *****************88777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	11.032	277	304	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.1E-5	279	301	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	279	300	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009294	Biological Process	DNA mediated transformation
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0010162	Biological Process	seed dormancy process
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005618	Cellular Component	cell wall
GO:0005730	Cellular Component	nucleolus
GO:0005739	Cellular Component	mitochondrion
GO:0005774	Cellular Component	vacuolar membrane
GO:0005829	Cellular Component	cytosol
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MEFWGAEVKS GQPLSVQPGD DMVLHLSQAS LGEVKKDKAS EPVCLSVTID GKKLVLGTLS 60 LDKLPQQQFD LVFDRDFELS HNWKNGSVYF FGYKAANPFE EYPFCFLFVS LTTIVCDTEE 120 DVDEDEDESD EEIPLTIANN GKTEAKDSAK DSASTKQKVR VIEFSKVDKA EDKDETTDES 180 ADEDDSMMGE DEEGDSDEDQ SDESEEETPK KAEPSRKRPA DSAAKTPVPD KKTKFLTPQK 240 TDGKKGAVHV ATPHPSKQAG KTPGNKPNQT PKSGGSLACK TCNRTFGSEN ALESHSKAKH 300 SAGK

Functional Description ? help Back to Top
Source	Description
UniProt	Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By fertilization. {ECO:0000269\|PubMed:15082924}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT014029	0.0	BT014029.1 Lycopersicon esculentum clone 133091F, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015088957.1	1e-176	histone deacetylase HDT1-like
Swissprot	Q6V9I6	1e-107	HDT1_SOLCH; Histone deacetylase HDT1
TrEMBL	A0A3Q7JGU1	0.0	A0A3Q7JGU1_SOLLC; Uncharacterized protein
STRING	Solyc10g085560.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3176	18	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44750.2	3e-33	histone deacetylase 3

Publications ? help Back to Top
Lagacé M,Chantha SC,Major G,Matton DP Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules. Plant Mol. Biol., 2003. 53(6): p. 759-69 [PMID:15082924]