PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen10g036050.2

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TALE

Protein Properties

Length: 256aa MW: 29199 Da PI: 8.2418

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen10g036050.2	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.1	8e-10	153	185	22	54
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp+ +++ LAk++gL+ +qV++WF N R + Sopen10g036050.2 153 HPYPTDSDKIMLAKQTGLSRNQVSNWFINARVR 185 89*****************************87 PP
2	BELL	72.9	5.3e-24	41	107	2	72
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 ++e+ + +k +s+l+eV++rYk y+eqlq v+ssFe vag+g+ ++l lka+ +hFrcL i++q+ Sopen10g036050.2 41 NHEHMRNNSKFISMLDEVYRRYKEYYEQLQGVVSSFESVAGVGN----ANLSLKALCKHFRCLIKSICDQM 107 57888999**********************************....689***************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.8E-6	6	105	IPR006563	POX domain
Pfam	PF07526	1.8E-19	34	103	IPR006563	POX domain
PROSITE profile	PS50071	11.791	126	189	IPR001356	Homeobox domain
SMART	SM00389	1.3E-9	129	193	IPR001356	Homeobox domain
CDD	cd00086	8.63E-12	129	190	No hit	No description
SuperFamily	SSF46689	1.92E-17	131	197	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.9E-28	132	193	IPR009057	Homeodomain-like
Pfam	PF05920	2.6E-19	146	185	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MSHNKAEEIS LELMQDISGI YAHKLLQDHH HSLGTMDDVS NHEHMRNNSK FISMLDEVYR 60 RYKEYYEQLQ GVVSSFESVA GVGNANLSLK ALCKHFRCLI KSICDQMKSS EINCDGNVCN 120 NLERGGYVWR PQRGLPERAV TLLRAWLFDH FLHPYPTDSD KIMLAKQTGL SRNQVSNWFI 180 NARVRVWKPM VEEIHMLENN KSSSQAQNNN NPEMNLSSSG GVSLTLGLNH QNKNNALSFP 240 RNAARRFGID PNNIIA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrm_A	2e-16	135	193	5	63	Homeobox protein Meis2
4xrm_B	2e-16	135	193	5	63	Homeobox protein Meis2
5bng_A	2e-16	135	193	1	59	Homeobox protein Meis2
5bng_B	2e-16	135	193	1	59	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269\|PubMed:12874117, ECO:0000269\|PubMed:12897247, ECO:0000269\|PubMed:13678595, ECO:0000269\|PubMed:15019989, ECO:0000269\|PubMed:15120075, ECO:0000269\|PubMed:15155890, ECO:0000269\|PubMed:16741748}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	1e-162	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027767846.1	0.0	BEL1-like homeodomain protein 9
Swissprot	Q9LZM8	6e-68	BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBL	A0A3Q7INH4	1e-155	A0A3Q7INH4_SOLLC; Uncharacterized protein
STRING	Solyc10g086640.1.1	1e-167	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02030.1	1e-69	TALE family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Pabón-Mora N,Wong GK,Ambrose BA Evolution of fruit development genes in flowering plants. Front Plant Sci, 2014. 5: p. 300 [PMID:25018763] Khan M, et al. Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis. Plant Physiol., 2015. 169(3): p. 2166-86 [PMID:26417006] Andrés F, et al. Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE. Plant Physiol., 2015. 169(3): p. 2187-99 [PMID:26417007] Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis. Dev. Cell, 2016. 39(2): p. 198-208 [PMID:27666746] Sehra B,Franks RG Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development. Front Plant Sci, 2017. 8: p. 1712 [PMID:29085379] Simonini S,Stephenson P,Østergaard L A molecular framework controlling style morphology in Brassicaceae. Development, 2018. [PMID:29440299]