PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g003870.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 419aa    MW: 46911.8 Da    PI: 5.57
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g003870.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.81.8e-52371641128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       l+pGfrFhPtdeelv +yL++k+ gk++++ e+++e+d+yk+ePwdL+  +++k+++ ewyfFs+ d+ky +g+r nrat +gyWkatgkd++
  Sopen11g003870.2  37 LAPGFRFHPTDEELVRYYLRRKACGKPFRV-EAVAEIDVYKSEPWDLRdySALKTRDLEWYFFSPVDRKYGNGSRLNRATGEGYWKATGKDRH 128
                       579***************************.89**************85347777888*********************************** PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       v + k++++g+kktLvf+kgrap+ge+t+Wvmheyrl
  Sopen11g003870.2 129 VSH-KSKNIGMKKTLVFHKGRAPDGERTNWVMHEYRL 164
                       **9.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-6333187IPR003441NAC domain
PROSITE profilePS5100558.05437187IPR003441NAC domain
PfamPF023654.3E-2839164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MEQEGALVLA PAPVGPVQPV PPVAPRRAVG VFSATSLAPG FRFHPTDEEL VRYYLRRKAC  60
GKPFRVEAVA EIDVYKSEPW DLRDYSALKT RDLEWYFFSP VDRKYGNGSR LNRATGEGYW  120
KATGKDRHVS HKSKNIGMKK TLVFHKGRAP DGERTNWVMH EYRLDDKELE AAGVVQDAFV  180
LCRIFQKSGL GPPNGDRYAP FIEEEWDDDT APLVAGGVTE DGVANGDEAR VEGNEFDQVI  240
LSLSLTVGCP KQDVRGKAPC ISENLFEPRA LSFVCKRERS EDLELLSLSQ SKRSKHDDPS  300
SSHANGSEDS TTSQQDPPTK TMTTTYSPTL LTFPLLDEPK EAPPTNSFNF DSSNLEKSVP  360
PGYLKFISNL ENQILNVSME RETAKIEVMR AQAMINILQS RLDFLNKENE DLRGLIRRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-513218715168NAC domain-containing protein 19
3swm_B1e-513218715168NAC domain-containing protein 19
3swm_C1e-513218715168NAC domain-containing protein 19
3swm_D1e-513218715168NAC domain-containing protein 19
3swp_A1e-513218715168NAC domain-containing protein 19
3swp_B1e-513218715168NAC domain-containing protein 19
3swp_C1e-513218715168NAC domain-containing protein 19
3swp_D1e-513218715168NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ5132890.0JQ513289.1 Solanum lycopersicum NAM-like protein (NLP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015058198.10.0NAC domain containing protein 50-like isoform X1
TrEMBLA0A3Q7JIC20.0A0A3Q7JIC2_SOLLC; Uncharacterized protein
STRINGSolyc11g008010.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31402448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.13e-93NAC domain containing protein 52