PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g006610.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 458aa    MW: 51385.8 Da    PI: 8.169
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g006610.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.84.5e-32263316255
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Sopen11g006610.1 263 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 316
                       9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-15260316IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-28261316IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-23263316IPR006447Myb domain, plants
PfamPF002498.5E-7264315IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009887Biological Processorgan morphogenesis
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010158Biological Processabaxial cell fate specification
GO:0010229Biological Processinflorescence development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MPLEGVFIET PSSSTKQIPD LSLNISPPTS LDLSGRRCVN EVSENHERLL SEFSKAGNCL  60
TELSLAHPTN ITTTTTTTIT NTNTVINDDM TTRRGFLDHL PRNPYYNNHH YQHQHKHQSQ  120
NYSHLVQPMN QINHGVSSLD VSDSLRPIKG IPVYNHNRSF PFLATNIDKE KDPKMCFYPS  180
SSPPSSSSPS SPSRYFNSRF NGISSSSYHH VPHHHPLQYH HHHHSQYGHL VHNSHHENIA  240
NSHSLMRSRF LPKLPAKRSM RAPRMRWTST LHARFVHAVE LLGGHERATP KSVLELMDVK  300
DLTLAHVKSH LQMYRTVKTT DKPAVSSGQS DGSGEDDLTT IGSTGGGDRA GLGRFMDQRG  360
GSDGSLQPEP EYPSTATNTL WSNSSSSREG WLQANSNDAN VLMRSHSFPS QQRSSHQIEE  420
CNSSKPKSYN IGSNLDHQKN PSLEFTLGRP DWIEKDHE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-16264318458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-16264318458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-16264318357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-16264318357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-16264318357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-16264318357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-16264318458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-16264318458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-16264318458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-16264318458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-16264318458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-16264318458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057203.10.0transcription repressor KAN1 isoform X1
TrEMBLA0A0V0IFG90.0A0A0V0IFG9_SOLCH; Putative transcription repressor KAN1-like
STRINGSolyc11g011770.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24682355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.11e-58G2-like family protein