PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g007460.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 404aa    MW: 45766.7 Da    PI: 5.3179
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g007460.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.41.9e-23292375186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       rW+k ev+aL+ +r+++++++ +g +k+  Weev++ +++ g+ r++k+Ckekwen+nk+yk++ ++ k r +++ ++cpyf +l+
  Sopen11g007460.1 292 RWPKLEVQALVSVRTRLDHKFLKG-AKGSVWEEVANGLAKMGYIRTAKKCKEKWENINKYYKRTIDSGKTR-PKNYRSCPYFYELD 375
                       8**********************9.99******************************************98.888899****9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.166285348IPR017877Myb-like domain
PfamPF138371.1E-19291377No hitNo description
CDDcd122032.63E-20291354No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MEPLIDGDGH PPNDITSFAN NLAPFPESTN VVYENPSAVI APPGIHRLPV SPVRKLRPVR  60
FGNGRNYVDM VDSNCDIDEA LMTCTSDLGF LSQFSAQNAS TVLPMECGFV NSLDENGVAK  120
CSEVGISAVQ QMKSELDADC LNLISQSRIL ETEFSSSSDS ESSEAIEEHL NRKRKRGTRK  180
SLKLSLEDMV KKLMDKQEQM HKQLIEMLEK KEEERIIREE AWKQQEVERA KRDVELRAEE  240
TSRNLALIAF LENLLGEDFQ IPKSSEVTSL VKDEGEVHGQ EADVRSDPCN RRWPKLEVQA  300
LVSVRTRLDH KFLKGAKGSV WEEVANGLAK MGYIRTAKKC KEKWENINKY YKRTIDSGKT  360
RPKNYRSCPY FYELDSLYKN GLLNQGAGNC VKIETENKNV DPEE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057167.10.0trihelix transcription factor GT-2 isoform X1
TrEMBLA0A3Q7JJS70.0A0A3Q7JJS7_SOLLC; Uncharacterized protein
STRINGSolyc11g012720.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128841620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.15e-44Trihelix family protein