PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g008630.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 209aa    MW: 23440.3 Da    PI: 8.9118
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g008630.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.43.4e-135398247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      +rWT++E+  ++++   +G+g+W+ Ia+ +   Rt+ q+ s+ qky
  Sopen11g008630.1 53 NRWTEDEQRAFLKGLDFHGKGNWTNIAKDFVPSRTPTQVASHAQKY 98
                      69*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.53447103IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-114999IPR009057Homeodomain-like
SuperFamilySSF466895.23E-1549102IPR009057Homeodomain-like
TIGRFAMsTIGR015575.4E-1450101IPR006447Myb domain, plants
SMARTSM007174.0E-1151101IPR001005SANT/Myb domain
PfamPF002494.4E-115398IPR001005SANT/Myb domain
CDDcd001675.93E-115499No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MARNCSEDEK SIKLIGFDIT TATTTTTTTT TSSAATVISE KDFLGKKMIK KGNRWTEDEQ  60
RAFLKGLDFH GKGNWTNIAK DFVPSRTPTQ VASHAQKYFV RLLDANSISN ERKKKRKKSS  120
VFDVRIEKTE DTDQAMVPLG NNQETHNVPN YMMKSVPTVM PLTWVYIYPY SDHYASTSIS  180
TTTFDKPISG ISSSSSSSSD EDDNLELKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117RKKKRKK
2113117KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057416.11e-155probable transcription factor At5g61620
TrEMBLM1CNS82e-94M1CNS8_SOLTU; Uncharacterized protein
STRINGSolyc11g013560.1.11e-108(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74541230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.13e-20MYB family protein