PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g011520.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 163aa    MW: 19020.3 Da    PI: 4.6775
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g011520.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM28.73.8e-0911233128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykv.ePwdLp.k.....kvkaeekew.y.fFskrdkkyatgkrknratksgyWka 85 
                       +G++FhP+ +e + ++L + v+++ ++ +  i++  d+y   eP ++  +      ++a+++++ y +F++           ++  ++g Wk+
  Sopen11g011520.1   1 MGYHFHPSAKERL-QFLLRFVAKSAMNDDGLITTNlDVYGEeEPLEIYsQgvptgGLEADDDDYsYrYFIT-----------KKNNNNGNWKQ 81 
                       59**********9.8899999999988877766555*996548**99633444442222222111212222...........22335799*** PP

               NAM  86 tgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +g++ +v+ k     ++ ++g+kk + +    +   e  +W+m++y+l
  Sopen11g011520.1  82 QGEEIPVFFKignvsTSLVMGTKKKMHYV---H---EFGHWIMKQYEL 123
                       ********997666555569*******99...2...3569******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100512.3231146IPR003441NAC domain
PfamPF023659.9E-92123IPR003441NAC domain
SuperFamilySSF1019414.58E-112144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MGYHFHPSAK ERLQFLLRFV AKSAMNDDGL ITTNLDVYGE EEPLEIYSQG VPTGGLEADD  60
DDYSYRYFIT KKNNNNGNWK QQGEEIPVFF KIGNVSTSLV MGTKKKMHYV HEFGHWIMKQ  120
YELSPVFFSR FGEDRKEYVL CAMKREYIDE CTFDDPQPAD EDV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057488.11e-121uncharacterized protein LOC107003692
TrEMBLA0A3Q7IU763e-76A0A3Q7IU76_SOLLC; Uncharacterized protein
STRINGSolyc11g022480.1.15e-77(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22191254