PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g020260.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Whirly
Protein Properties Length: 237aa    MW: 26527.3 Da    PI: 10.7135
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g020260.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly202.16.8e-63611991139
            Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrka 93 
                       sv+k+kaal+ ++++ptf+ ldsg +kl+r+G ++l++ ++++erkydWek+q falsatev++l+++++++s+effhdp++ +sn+G+vrk+
  Sopen11g020260.2  61 SVFKGKAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSLISMGTRDSSEFFHDPSMLSSNAGQVRKS 153
                       79******************************************************************************************* PP

            Whirly  94 lkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                       l+++P +dGsG+f++lsv n+ +k+n++f+vPv+ aefav+r++++
  Sopen11g020260.2 154 LSIKPNADGSGYFISLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFS 199
                       *******************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.7E-7549218IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.18E-6454232IPR009044ssDNA-binding transcriptional regulator
PfamPF085363.4E-5962196IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MLKVSRLLHP RNQLLHKKLP GEDVKGSIWQ NAINTFAAFS TVRQDVVADG KREGRVFAPY  60
SVFKGKAALS AEPRLPTFNR LDSGGVKLNR RGVIMLTFWP SVGERKYDWE KRQLFALSAT  120
EVGSLISMGT RDSSEFFHDP SMLSSNAGQV RKSLSIKPNA DGSGYFISLS VVNNNLKTND  180
RFTVPVTTAE FAVMRTAFSF ALPHIMGWDR FTNRPSESIS QSPSKVVPQL MEAEWDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A1e-121502175172StWhy2
3n1i_A1e-121502175172protein StWhy2
3n1j_A1e-121502175172Protein StWhy2
3n1k_A1e-121502175172protein StWhy2
3n1l_A1e-121502175172protein StWhy2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2345040.0HM234504.1 Solanum tuberosum Why2 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015056794.11e-175single-stranded DNA-binding protein WHY2, mitochondrial isoform X4
SwissprotD9J0341e-171WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A3Q7JMC91e-170A0A3Q7JMC9_SOLLC; Uncharacterized protein
STRINGSolyc11g044750.1.11e-164(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.12e-94WHIRLY 2