PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g021820.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 210aa    MW: 23769.8 Da    PI: 9.5525
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g021820.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.5e-1356101247
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++WT++E+  ++++   +G+g+W++Ia+ +   Rt  q+ s+ qky
  Sopen11g021820.1  56 NPWTEDEQIAFLKGLDFHGKGNWSKIAKDFVPSRTSTQVASHAQKY 101
                       69*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.79450106IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-1153103IPR009057Homeodomain-like
SMARTSM007176.4E-1154104IPR001005SANT/Myb domain
PfamPF002493.2E-1156101IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.8E-1356104IPR006447Myb domain, plants
SuperFamilySSF466891.94E-1356105IPR009057Homeodomain-like
CDDcd001671.07E-1057102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MERNCTVCGG NGHNQRTCSE KGKSIKLFGV EITTTTSAGG AMSKKDSMER RIMKGNPWTE  60
DEQIAFLKGL DFHGKGNWSK IAKDFVPSRT STQVASHAQK YFMRLLDANE RKYRKKSSVF  120
YLRLDQLEDT HDHAIVPLGN NYESQNVPSV VPNYYMMKRV LPLNWVYMYP YYHHDYASTS  180
ASATTFNKPL SGISSSSNSS SKENNLDLTL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057649.11e-159transcription factor MYBS3-like
TrEMBLA0A3Q7IWL81e-135A0A3Q7IWL8_SOLLC; Uncharacterized protein
STRINGSolyc11g050730.1.11e-136(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74541230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-25MYB_related family protein