PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g024280.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Nin-like
Protein Properties Length: 260aa    MW: 29514.1 Da    PI: 5.5452
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g024280.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK47.53.4e-15111159552
            RWP-RK   5 isledl.skyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                       i+ ++l ++yF +++++AAk+L+v+ ++LKr  R   I+RWPh k +++
  Sopen11g024280.1 111 ITRQVLeQQYFGMTLEQAAKHLNVSKSTLKRMSRICDIPRWPHHKTRKV 159
                       667777468************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151910.70595181IPR003035RWP-RK domain
PfamPF020425.2E-16118159IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MYTSTKQNCI DYRSEIFEEL EQLITFSDSP SSQPELNYHD VGASIGLDSS EIDEYWLEPF  60
NSKEPAQLDA SFLQQVAHET DSQSNVHIDR SGISQSKKKV AKERIEKTYG ITRQVLEQQY  120
FGMTLEQAAK HLNVSKSTLK RMSRICDIPR WPHHKTRKVD HHVSQGISLP VVADHLVLNM  180
KNMSTVVDGR LLDNNDQVPI APPRATDLVA SLLNDLHIAR EQNDALHTEI ETMRTNLAES  240
LGEVARLKEQ LLQQQQDSIA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057362.10.0uncharacterized protein LOC107003538
TrEMBLA0A0V0H8242e-84A0A0V0H824_SOLCH; Putative ovule protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.14e-10Nin-like family protein