PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g024750.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 226aa    MW: 26662.2 Da    PI: 7.5242
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g024750.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind118.83.1e-37241162103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d++ ++++sw e +n+fvv+ + efak++Lp+yFkh+nf+SFvRQLn+YgFkk+  e+         weF++++Fkkg+k+ll
  Sopen11g024750.1  24 FLTKTYQLVDDPSSDHIVSWGEYENTFVVWRPPEFAKDLLPNYFKHNNFSSFVRQLNTYGFKKIVAER---------WEFANEHFKKGQKHLL 107
                       9****************************************************************999.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       ++i+r+ks+
  Sopen11g024750.1 108 CEIQRRKST 116
                       ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.1E-5720113IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.09E-3321113IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.9E-3821113IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.8E-3224113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-192447IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-196274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-197587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MASSSTCGDQ EMIFTMQKAM VAPFLTKTYQ LVDDPSSDHI VSWGEYENTF VVWRPPEFAK  60
DLLPNYFKHN NFSSFVRQLN TYGFKKIVAE RWEFANEHFK KGQKHLLCEI QRRKSTPQQL  120
HHLTPYQEHI TRSICHQEIQ NPSSSVDHDI LLALTQDNER LRKRNIVLLS ELTHMKNLYN  180
DIIYFIQNHV KPVEEKSRVF LLNGGLNHHH RQVHIEDHEE PKSDKG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-222111617123Heat shock factor protein 1
5d5u_B6e-222111326129Heat shock factor protein 1
5d5v_B6e-222111326129Heat shock factor protein 1
5d5v_D6e-222111326129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015058079.21e-169heat stress transcription factor B-4b-like
SwissprotQ9C6358e-78HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A3Q7IYP81e-162A0A3Q7IYP8_SOLLC; Uncharacterized protein
STRINGSolyc11g064990.1.11e-163(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27212450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.13e-80heat shock transcription factor B4