PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g025790.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Dof
Protein Properties Length: 316aa    MW: 34390 Da    PI: 8.8685
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g025790.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.14.5e-3969128362
            zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                       e+ lkcprCds+ntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+++
  Sopen11g025790.1  69 EAGLKCPRCDSSNTKFCYFNNYSLSQPRHFCKNCRRYWTRGGALRNVPVGGGCRRNKRNK 128
                       6779*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-3452121IPR003851Zinc finger, Dof-type
PfamPF027011.6E-3271126IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.85172126IPR003851Zinc finger, Dof-type
PROSITE patternPS01361074110IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAFSSFPIYL DHPNLHHLQQ QPDHHQQGNP GLDNPQLLPP PTQVGGGPGS IRPGSMVDRA  60
RMAKLPLPEA GLKCPRCDSS NTKFCYFNNY SLSQPRHFCK NCRRYWTRGG ALRNVPVGGG  120
CRRNKRNKSS NNNNSAKSGG GGGLMGNSNN ASTSGIPSIN CSMEMIGHHF SQSSTQFTSI  180
MGAFQNLNNY GGGLIQPPTH QLVGEMGFQI GSNNLLPSLV ASNNFEHPTN LYPNFQNEGT  240
TTTTTTIEAS NGATQQVKME DNSRQGMNSS TKQFLGTLEN NNQYWNVANE NANVNSWIGF  300
SSDLNNNSLS TTNHLL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057224.10.0dof zinc finger protein DOF5.1-like
TrEMBLK4D9L40.0K4D9L4_SOLLC; Uncharacterized protein
STRINGSolyc11g066050.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.12e-42OBF-binding protein 3